LICENSE
README.md
setup.cfg
setup.py
zebrazoom/GUIAllPy.py
zebrazoom/__init__.py
zebrazoom/__main__.py
zebrazoom/clusteringAnalysis.py
zebrazoom/clusteringAnalysisPerFrame.py
zebrazoom/extractZZParametersFromTailAngle.py
zebrazoom/getTailExtremityFirstFrame.py
zebrazoom/kinematicParametersAnalysis.py
zebrazoom/kinematicParametersAnalysisCenterOfMassOnlyNoBoutsDetection.py
zebrazoom/mainZZ.py
zebrazoom/recreateSuperStruct.py
zebrazoom.egg-info/PKG-INFO
zebrazoom.egg-info/SOURCES.txt
zebrazoom.egg-info/dependency_links.txt
zebrazoom.egg-info/requires.txt
zebrazoom.egg-info/top_level.txt
zebrazoom/ZZoutput/example1/configUsed.json
zebrazoom/ZZoutput/example1/results_example1.txt
zebrazoom/ZZoutput/example2/configUsed.json
zebrazoom/ZZoutput/example2/results_example2.txt
zebrazoom/ZZoutput/example3/configUsed.json
zebrazoom/ZZoutput/example3/results_example3.txt
zebrazoom/code/__init__.py
zebrazoom/code/adjustHyperparameters.py
zebrazoom/code/checkConsistencyOfParameters.py
zebrazoom/code/createSuperStruct.py
zebrazoom/code/createValidationVideo.py
zebrazoom/code/defaultConfigFile.json
zebrazoom/code/detectMovementWithRawVideo.py
zebrazoom/code/extractParameters.py
zebrazoom/code/fasterMultiprocessing.py
zebrazoom/code/findWells.py
zebrazoom/code/getBackground.py
zebrazoom/code/getHyperparameters.py
zebrazoom/code/popUpAlgoFollow.py
zebrazoom/code/popUpAlgoFollowOldVersion.py
zebrazoom/code/preprocessImage.py
zebrazoom/code/readValidationVideo.py
zebrazoom/code/resizeImageTooLarge.py
zebrazoom/code/util.py
zebrazoom/code/vars.py
zebrazoom/code/GUI/GUI_InitialClasses.py
zebrazoom/code/GUI/GUI_InitialFunctions.py
zebrazoom/code/GUI/__init__.py
zebrazoom/code/GUI/adjustParameterInsideAlgo.py
zebrazoom/code/GUI/adjustParameterInsideAlgoFunctions.py
zebrazoom/code/GUI/automaticallyFindOptimalParameters.py
zebrazoom/code/GUI/automaticallyFindOptimalParametersFunctions.py
zebrazoom/code/GUI/blobCenter.png
zebrazoom/code/GUI/blobExtremity.png
zebrazoom/code/GUI/configFilePrepare.py
zebrazoom/code/GUI/configFilePrepareFunctions.py
zebrazoom/code/GUI/configFileZebrafish.py
zebrazoom/code/GUI/configFileZebrafishFunctions.py
zebrazoom/code/GUI/dataAnalysisGUI.py
zebrazoom/code/GUI/dataAnalysisGUIFunctions.py
zebrazoom/code/GUI/getCoordinates.py
zebrazoom/code/GUI/leftborder.png
zebrazoom/code/GUI/no1.png
zebrazoom/code/GUI/no2.png
zebrazoom/code/GUI/ok1.png
zebrazoom/code/GUI/rightborder.png
zebrazoom/code/GUI/savedjustincase.png
zebrazoom/code/GUI/troubleshooting.py
zebrazoom/code/GUI/troubleshootingFunction.py
zebrazoom/code/dataPostProcessing/__init__.py
zebrazoom/code/dataPostProcessing/computeEyesHeadingPlot.py
zebrazoom/code/dataPostProcessing/createPandasDataFrameOfParameters.py
zebrazoom/code/dataPostProcessing/dataPostProcessing.py
zebrazoom/code/dataPostProcessing/findSleepVsMoving.py
zebrazoom/code/dataPostProcessing/generateAllTimeTailAngleGraph.py
zebrazoom/code/dataPostProcessing/perBoutOutput.py
zebrazoom/code/dataPostProcessing/tailAnglesHeatmap.py
zebrazoom/code/deepLearningFunctions/__init__.py
zebrazoom/code/deepLearningFunctions/labellingFunctions.py
zebrazoom/code/deepLearningFunctions/loadDLmodel.py
zebrazoom/code/deepLearningFunctions/trackingDL.py
zebrazoom/code/deepLearningFunctions/PyTorchFunctions/__init__.py
zebrazoom/code/deepLearningFunctions/PyTorchFunctions/coco_eval.py
zebrazoom/code/deepLearningFunctions/PyTorchFunctions/coco_utils.py
zebrazoom/code/deepLearningFunctions/PyTorchFunctions/engine.py
zebrazoom/code/deepLearningFunctions/PyTorchFunctions/transforms.py
zebrazoom/code/deepLearningFunctions/PyTorchFunctions/utils.py
zebrazoom/code/getImage/__init__.py
zebrazoom/code/getImage/getForegroundImage.py
zebrazoom/code/getImage/getForegroundImageSequential.py
zebrazoom/code/getImage/getImage.py
zebrazoom/code/getImage/getImageSequential.py
zebrazoom/code/getImage/headEmbededFrame.py
zebrazoom/code/getImage/headEmbededFrameBackExtract.py
zebrazoom/code/getImage/headEmbededFrameSequential.py
zebrazoom/code/getImage/headEmbededFrameSequentialBackExtract.py
zebrazoom/code/trackingFolder/__init__.py
zebrazoom/code/trackingFolder/blackFramesDetection.py
zebrazoom/code/trackingFolder/debugTracking.py
zebrazoom/code/trackingFolder/fishTailTrackingDifficultBackground.py
zebrazoom/code/trackingFolder/getImages.py
zebrazoom/code/trackingFolder/postProcessMultipleTrajectories.py
zebrazoom/code/trackingFolder/tailTracking.py
zebrazoom/code/trackingFolder/tracking.py
zebrazoom/code/trackingFolder/trackingFunctions.py
zebrazoom/code/trackingFolder/eyeTracking/__init__.py
zebrazoom/code/trackingFolder/eyeTracking/eyeTracking.py
zebrazoom/code/trackingFolder/headTrackingHeadingCalculationFolder/__init__.py
zebrazoom/code/trackingFolder/headTrackingHeadingCalculationFolder/calculateHeading.py
zebrazoom/code/trackingFolder/headTrackingHeadingCalculationFolder/headTrackingHeadingCalculation.py
zebrazoom/code/trackingFolder/headTrackingHeadingCalculationFolder/headTrackingTakeHeadClosestToWellCenter.py
zebrazoom/code/trackingFolder/headTrackingHeadingCalculationFolder/multipleAnimalsHeadTracking.py
zebrazoom/code/trackingFolder/headTrackingHeadingCalculationFolder/multipleAnimalsHeadTrackingAdvance.py
zebrazoom/code/trackingFolder/tailTrackingFunctionsFolder/__init__.py
zebrazoom/code/trackingFolder/tailTrackingFunctionsFolder/centerOfMassTailTracking.py
zebrazoom/code/trackingFolder/tailTrackingFunctionsFolder/getTailTipManual.py
zebrazoom/code/trackingFolder/tailTrackingFunctionsFolder/headEmbededTailTracking.py
zebrazoom/code/trackingFolder/tailTrackingFunctionsFolder/headEmbededTailTrackingTeresaNicolson.py
zebrazoom/code/trackingFolder/tailTrackingFunctionsFolder/tailTrackingBlobDescent.py
zebrazoom/code/trackingFolder/tailTrackingFunctionsFolder/tailTrackingExtremityDetectFolder/Rotate.py
zebrazoom/code/trackingFolder/tailTrackingFunctionsFolder/tailTrackingExtremityDetectFolder/__init__.py
zebrazoom/code/trackingFolder/tailTrackingFunctionsFolder/tailTrackingExtremityDetectFolder/findBodyContour.py
zebrazoom/code/trackingFolder/tailTrackingFunctionsFolder/tailTrackingExtremityDetectFolder/findTheTwoSides.py
zebrazoom/code/trackingFolder/tailTrackingFunctionsFolder/tailTrackingExtremityDetectFolder/getMidline.py
zebrazoom/code/trackingFolder/tailTrackingFunctionsFolder/tailTrackingExtremityDetectFolder/resampleSeqConstPtsPerArcLength.py
zebrazoom/code/trackingFolder/tailTrackingFunctionsFolder/tailTrackingExtremityDetectFolder/tailTrackingExtremityDetect.py
zebrazoom/code/trackingFolder/tailTrackingFunctionsFolder/tailTrackingExtremityDetectFolder/findTailExtremeteFolder/__init__.py
zebrazoom/code/trackingFolder/tailTrackingFunctionsFolder/tailTrackingExtremityDetectFolder/findTailExtremeteFolder/checkIfMidlineIsInBlob.py
zebrazoom/code/trackingFolder/tailTrackingFunctionsFolder/tailTrackingExtremityDetectFolder/findTailExtremeteFolder/findTailExtremete.py
zebrazoom/code/trackingFolder/tailTrackingFunctionsFolder/tailTrackingExtremityDetectFolder/findTailExtremeteFolder/functions.py
zebrazoom/code/trackingFolder/tailTrackingFunctionsFolder/tailTrackingExtremityDetectFolder/findTailExtremeteFolder/insideTailExtremete.py
zebrazoom/configuration/4wellsZebrafishLarvaeEscapeResponses.json
zebrazoom/configuration/__init__.py
zebrazoom/configuration/fliesInTube.json
zebrazoom/configuration/headEmbeddedZebrafishLarva.json
zebrazoom/configuration/screenFastTrackingConfigFileTemplate.json
zebrazoom/configuration/testThresholdsForFastScreen.json
zebrazoom/configuration/toCreateConfigFileForBarelyMovingAnimals.json
zebrazoom/dataAnalysis/__init__.py
zebrazoom/dataAnalysis/cluster_1a_UsageExample.py
zebrazoom/dataAnalysis/cluster_1b_UsageExampleReloadClassifier.py
zebrazoom/dataAnalysis/populationCompare_UsageExample.py
zebrazoom/dataAnalysis/classifiers/__init__.py
zebrazoom/dataAnalysis/data/__init__.py
zebrazoom/dataAnalysis/dataanalysis/__init__.py
zebrazoom/dataAnalysis/dataanalysis/activeLearning.py
zebrazoom/dataAnalysis/dataanalysis/applyClustering.py
zebrazoom/dataAnalysis/dataanalysis/applyClusteringPerFrame.py
zebrazoom/dataAnalysis/dataanalysis/createSuperClusterVideo.py
zebrazoom/dataAnalysis/dataanalysis/outputValidationVideo.py
zebrazoom/dataAnalysis/dataanalysis/populationComparaison.py
zebrazoom/dataAnalysis/dataanalysis/readValidationVideoDataAnalysis.py
zebrazoom/dataAnalysis/dataanalysis/reapplyClustering.py
zebrazoom/dataAnalysis/dataanalysis/visualizeClusters.py
zebrazoom/dataAnalysis/datasetcreation/__init__.py
zebrazoom/dataAnalysis/datasetcreation/createDataFrame.py
zebrazoom/dataAnalysis/datasetcreation/createDataFramePerFrame.py
zebrazoom/dataAnalysis/datasetcreation/createDatasetsForExperiments.py
zebrazoom/dataAnalysis/datasetcreation/gatherInitialRawData.py
zebrazoom/dataAnalysis/datasetcreation/generatePklDataFileForVideo.py
zebrazoom/dataAnalysis/datasetcreation/getDeltaHead.py
zebrazoom/dataAnalysis/datasetcreation/getDynamicParameters.py
zebrazoom/dataAnalysis/datasetcreation/getGlobalParameters.py
zebrazoom/dataAnalysis/datasetcreation/getInstaHeadingDiff.py
zebrazoom/dataAnalysis/datasetcreation/getInstaHorizontalDisplacement.py
zebrazoom/dataAnalysis/datasetcreation/getInstaMaxTailBendPos.py
zebrazoom/dataAnalysis/datasetcreation/getInstaSpeed.py
zebrazoom/dataAnalysis/datasetcreation/getTailAngleRecalculated.py
zebrazoom/dataAnalysis/datasetcreation/getTailAngleRecalculated2.py
zebrazoom/dataAnalysis/datasetcreation/getTailAngles.py
zebrazoom/dataAnalysis/datasetcreation/getTailLength.py
zebrazoom/dataAnalysis/datasetcreation/getTailLength2.py
zebrazoom/dataAnalysis/experimentOrganizationExcel/__init__.py
zebrazoom/dataAnalysis/experimentOrganizationExcel/example.xls
zebrazoom/dataAnalysis/postProcessingFromCommandLine/__init__.py
zebrazoom/dataAnalysis/postProcessingFromCommandLine/postProcessingFromCommandLine.py
zebrazoom/dataAnalysis/resultsClustering/__init__.py
zebrazoom/dataAnalysis/resultsKinematic/__init__.py
zebrazoom/otherScripts/__init__.py
zebrazoom/otherScripts/launchActiveLearning.py
zebrazoom/otherScripts/launchOptimalClusterNumberSearch.py
zebrazoom/otherScripts/launchReapplyClustering.py
zebrazoom/videoFormatConversion/__init__.py
zebrazoom/videoFormatConversion/seq_to_avi.py
zebrazoom/videoFormatConversion/zzVideoReading.py