from .analysis import (
    compute_histogram,
    compute_otsu_thresholds,
    compute_region_properties,
    create_mip_visualization,
    density_from_points,
)
from .atlas import ZarrNiiAtlas
from .core import (
    MetadataInvalidError,
    ZarrNii,
    save_ngff_image,
    save_ngff_image_with_ome_zarr,
)
from .transform import AffineTransform, DisplacementTransform

__all__ = [
    "ZarrNii",
    "ZarrNiiAtlas",
    "AffineTransform",
    "DisplacementTransform",
    "MetadataInvalidError",
    "save_ngff_image",
    "save_ngff_image_with_ome_zarr",
    "create_mip_visualization",
    "compute_centroids",
    "compute_region_properties",
    "compute_histogram",
    "compute_otsu_thresholds",
    "density_from_points",
]
