Metadata-Version: 2.2
Name: zagar
Version: 0.1.0
Summary: Efficient algorithms for exact and approximate enumeration of admixed arrays
Keywords: combinatorics,binary matrices,counting
Author-Email: "Alan J. Aw" <nalawanij@gmail.com>
Maintainer-Email: "Alan J. Aw" <nalawanij@gmail.com>
License: GPL-3.0-or-later
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Classifier: Programming Language :: Python :: 3.12
Classifier: Programming Language :: C++
Classifier: Topic :: Scientific/Engineering :: Mathematics
Requires-Python: >=3.8
Provides-Extra: test
Requires-Dist: pytest>=7.0; extra == "test"
Provides-Extra: dev
Requires-Dist: pytest>=7.0; extra == "dev"
Requires-Dist: build; extra == "dev"
Requires-Dist: twine; extra == "dev"
Description-Content-Type: text/markdown

# Efficient algorithms for exact and approximate enumeration of admixed arrays

Admixed arrays are discrete structures arising from analyses of genetically admixed populations, and are closely related
to binary matrices. **zagar** is a software that allows the user to compute the cardinality of constrained sets
of admixed arrays. These constraints include individual global ancestry proportions (a row sum constraint) and
ancestry-specific allele frequencies (a column sum constraint). Analytically derived approximate counts are provided for
a special semi-regular constraint.

## Project Website

Installation instructions, tutorials and API documentation can be found here:

	https://alanaw1.github.io/zagar


## License

Our software carries a [GPL-3.0](https://www.gnu.org/licenses/gpl-3.0.en.html) license.

Our project website carries a [CC BY 4.0](https://creativecommons.org/licenses/by/4.0/) license.
