setupset.copyarg.userawtlt = 1
setupset.copyarg.stackext = mrc
setupset.copyarg.rotation = 85
setupset.copyarg.pixel = 0.0675
setupset.copyarg.gold = 10
setupset.copyarg.dual = 0
runtime.Positioning.any.wholeTomogram = 1
runtime.PatchTracking.any.adjustTiltAngles = 0
runtime.Fiducials.any.trackingMethod = 1
runtime.Fiducials.any.seedingMethod = 3
runtime.Excludeviews.any.deleteOldFiles = 0
runtime.AlignedStack.any.binByFactor = 8
comparam.xcorr_pt.tiltxcorr.SizeOfPatchesXandY = 180,180
comparam.xcorr_pt.tiltxcorr.OverlapOfPatchesXandY = 0.33
comparam.xcorr_pt.tiltxcorr.ShiftLimitsXandY = 200,200
comparam.xcorr_pt.tiltxcorr.LengthAndOverlap = 16,4
comparam.xcorr_pt.tiltxcorr.IterateCorrelations = 20
comparam.xcorr_pt.tiltxcorr.FilterSigma2 = 0.03
comparam.xcorr_pt.tiltxcorr.FilterRadius2 = 0.125
comparam.track.beadtrack.SobelFilterCentering = 1
comparam.track.beadtrack.ScalableSigmaForSobel = 0.12
comparam.tilt.tilt.THICKNESS = 3000
comparam.prenewst.newstack.BinByFactor = 8
comparam.prenewst.newstack.AntialiasFilter = -1
comparam.newst.newstack.TaperAtFill = 1,1
comparam.newst.newstack.AntialiasFilter = -1
comparam.golderaser.ccderaser.ExpandCircleIterations = 3
comparam.eraser.ccderaser.PeakCriterion = 8.0
comparam.eraser.ccderaser.DiffCriterion = 6.0
comparam.align.tiltalign.TiltOption = 0
comparam.align.tiltalign.SurfacesToAnalyze = 1
comparam.align.tiltalign.RotOption = -1
comparam.align.tiltalign.MagOption = 0
comparam.align.tiltalign.BeamTiltOption = 2
