LICENSE
README.md
pyproject.toml
src/yallhap/__init__.py
src/yallhap/ancient.py
src/yallhap/bayesian.py
src/yallhap/classifier.py
src/yallhap/cli.py
src/yallhap/contamination.py
src/yallhap/isogg.py
src/yallhap/py.typed
src/yallhap/scoring.py
src/yallhap/snps.py
src/yallhap/tree.py
src/yallhap/validation.py
src/yallhap/vcf.py
src/yallhap.egg-info/PKG-INFO
src/yallhap.egg-info/SOURCES.txt
src/yallhap.egg-info/dependency_links.txt
src/yallhap.egg-info/entry_points.txt
src/yallhap.egg-info/requires.txt
src/yallhap.egg-info/top_level.txt
tests/test_ancient.py
tests/test_bayesian.py
tests/test_classifier.py
tests/test_cli.py
tests/test_contamination.py
tests/test_integration.py
tests/test_isogg.py
tests/test_output.py
tests/test_path_traversal.py
tests/test_scoring.py
tests/test_snps.py
tests/test_tree.py
tests/test_validation.py
tests/test_vcf_allelic_depth.py