.gitignore
LICENSE
README.md
pyproject.toml
.github/workflows/black.yml
.github/workflows/docs.yml
.github/workflows/pylint.yml
.github/workflows/pypi.yml
.github/workflows/test.yml
docs/Makefile
docs/cli.md
docs/conf.py
docs/index.md
docs/input_data.md
docs/installation.md
docs/make.bat
docs/quickstart.md
docs/web.md
docs/Instructions/pictures/About.png
docs/Instructions/pictures/AddFilter.png
docs/Instructions/pictures/AddSpecies1.png
docs/Instructions/pictures/AddSpecies2.png
docs/Instructions/pictures/BF.png
docs/Instructions/pictures/ClAssT_Ergebnis1.png
docs/Instructions/pictures/ClAssT_Ergebnis2.png
docs/Instructions/pictures/ClAssT_Ergebnis3.png
docs/Instructions/pictures/ClAssT_Hauptseite.png
docs/Instructions/pictures/CommandLine_Input.png
docs/Instructions/pictures/CommandLine_results.png
docs/Instructions/pictures/CommandLine_whole.png
docs/Instructions/pictures/How2Use.png
docs/Instructions/pictures/HowtouseAspecT.png
docs/Instructions/pictures/XspecT_Ergebnis1.png
docs/Instructions/pictures/XspecT_Ergebnis2.png
docs/Instructions/pictures/XspecT_Ergebnis3.png
docs/Instructions/pictures/XspecT_Ergebnis4.png
docs/Instructions/pictures/XspecT_Hauptseite.png
docs/Instructions/pictures/XspecT_Runtime.png
docs/Instructions/pictures/XspecT_Runtime_Oxa.png
docs/Instructions/pictures/XspecT_Startseite.png
docs/Instructions/pictures/change_pw.png
docs/Instructions/pictures/modify_vecs.png
docs/Instructions/pictures/secretkey.png
docs/diagrams/probabilistic_filter_models.md
docs/img/logo.png
src/XspecT.egg-info/PKG-INFO
src/XspecT.egg-info/SOURCES.txt
src/XspecT.egg-info/dependency_links.txt
src/XspecT.egg-info/entry_points.txt
src/XspecT.egg-info/requires.txt
src/XspecT.egg-info/top_level.txt
src/xspect/__init__.py
src/xspect/definitions.py
src/xspect/download_filters.py
src/xspect/fastapi.py
src/xspect/file_io.py
src/xspect/main.py
src/xspect/model_management.py
src/xspect/pipeline.py
src/xspect/run.py
src/xspect/train.py
src/xspect/models/__init__.py
src/xspect/models/probabilistic_filter_model.py
src/xspect/models/probabilistic_filter_svm_model.py
src/xspect/models/probabilistic_single_filter_model.py
src/xspect/models/result.py
src/xspect/train_filter/__init__.py
src/xspect/train_filter/create_svm.py
src/xspect/train_filter/extract_and_concatenate.py
src/xspect/train_filter/html_scrap.py
src/xspect/train_filter/ncbi_api/__init__.py
src/xspect/train_filter/ncbi_api/download_assemblies.py
src/xspect/train_filter/ncbi_api/ncbi_assembly_metadata.py
src/xspect/train_filter/ncbi_api/ncbi_children_tree.py
src/xspect/train_filter/ncbi_api/ncbi_taxon_metadata.py
tests/__init__.py
tests/conftest.py
tests/test_file_io.py
tests/test_model_management.py
tests/test_model_result.py
tests/test_pipeline.py
tests/test_probabilistic_filter_model.py
tests/test_probabilistic_filter_svm_model.py
tests/test_probabilistic_single_filter_model.py
tests/test_train.py