Metadata-Version: 2.1
Name: xpore
Version: 0.5.4
Summary: xpore is a python package for Nanopore data analysis.
Home-page: https://github.com/GoekeLab/xpore
Author: Ploy N. Pratanwanich
Maintainer-email: naruemon.p@chula.ac.th
License: MIT
Platform: UNKNOWN
Classifier: Development Status :: 1 - Planning
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3.5
Classifier: Programming Language :: Python :: 3.6
Classifier: Topic :: Software Development :: Libraries
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Intended Audience :: Science/Research
Requires-Python: >=3.5
Description-Content-Type: text/markdown
Requires-Dist: numpy (>=1.18.0)
Requires-Dist: pandas (>=0.25.3)
Requires-Dist: scipy (>=1.4.1)
Requires-Dist: PyYAML
Requires-Dist: h5py (>=2.10.0)
Requires-Dist: pyensembl (>=1.8.5)

![alt text](https://github.com/GoekeLab/xpore/blob/master/figures/xpore_textlogo.png "xPore")

Python package for detection of differential RNA modifications from direct RNA sequencing.

[![PyPI version](https://badge.fury.io/py/xpore.svg)](https://badge.fury.io/py/xpore)
[![Documentation Status](https://readthedocs.org/projects/xpore/badge/?version=latest)](https://xpore.readthedocs.io/en/latest/?badge=latest)
[![Downloads](https://pepy.tech/badge/xpore)](https://pepy.tech/project/xpore)

---

### PyPI installation (recommended)

xPore requires [Python3](https://www.python.org).
To install the latest release, run

```sh
$ pip install xpore 
$ pyensembl install --release 91 --species homo_sapiens  # please specify the compatible Ensembl release with your data when you install it.
```

See our documentation [here](https://xpore.readthedocs.io)!

---

### Preprint

Please check out our preprint "Detection of differential RNA modifications from direct RNA sequencing of human cell lines" [here](https://www.biorxiv.org/content/10.1101/2020.06.18.160010v1).

---

### Contacts

xPore is maintained by [Ploy N. Pratanwanich](https://github.com/ploy-np) and [Jonathan Goeke](https://github.com/jonathangoeke) from the Genome Institute of Singapore, A*STAR. 

If you want to contribute, please leave an issue in our repo. 

Thank you!


