LICENSE
README.md
setup.py
Xponge/__init__.py
Xponge/__main__.py
Xponge/build.py
Xponge/load.py
Xponge/process.py
Xponge.egg-info/PKG-INFO
Xponge.egg-info/SOURCES.txt
Xponge.egg-info/dependency_links.txt
Xponge.egg-info/entry_points.txt
Xponge.egg-info/requires.txt
Xponge.egg-info/top_level.txt
Xponge/analysis/__init__.py
Xponge/analysis/md_analysis.py
Xponge/assign/__init__.py
Xponge/assign/bond_order.py
Xponge/assign/gasteiger.py
Xponge/assign/resp.py
Xponge/forcefield/__init__.py
Xponge/forcefield/amber/OL15.frcmod
Xponge/forcefield/amber/RNA.mol2
Xponge/forcefield/amber/RSFF2C.dat
Xponge/forcefield/amber/__init__.py
Xponge/forcefield/amber/atomic_ions.mol2
Xponge/forcefield/amber/bsc1.mol2
Xponge/forcefield/amber/bsc1.py
Xponge/forcefield/amber/ff14SB.frcmod
Xponge/forcefield/amber/ff14SB.mol2
Xponge/forcefield/amber/ff14sb.py
Xponge/forcefield/amber/ff19SB.frcmod
Xponge/forcefield/amber/ff19SB.mol2
Xponge/forcefield/amber/ff19sb.py
Xponge/forcefield/amber/gaff.dat
Xponge/forcefield/amber/gaff.py
Xponge/forcefield/amber/gaff2.dat
Xponge/forcefield/amber/ions1lm_126_spce.frcmod
Xponge/forcefield/amber/ions1lm_126_tip3p.frcmod
Xponge/forcefield/amber/ions1lm_126_tip4pew.frcmod
Xponge/forcefield/amber/ions234lm_126_spce.frcmod
Xponge/forcefield/amber/ions234lm_126_tip3p.frcmod
Xponge/forcefield/amber/ions234lm_126_tip4pew.frcmod
Xponge/forcefield/amber/ionsjc_spce.frcmod
Xponge/forcefield/amber/ionsjc_tip3p.frcmod
Xponge/forcefield/amber/ionsjc_tip4pew.frcmod
Xponge/forcefield/amber/lipid14.dat
Xponge/forcefield/amber/lipid14.mol2
Xponge/forcefield/amber/lipid14.py
Xponge/forcefield/amber/lipid17.dat
Xponge/forcefield/amber/lipid17.mol2
Xponge/forcefield/amber/lipid17.py
Xponge/forcefield/amber/ol15.mol2
Xponge/forcefield/amber/ol15.py
Xponge/forcefield/amber/ol3.py
Xponge/forcefield/amber/opc.mol2
Xponge/forcefield/amber/opc.py
Xponge/forcefield/amber/parm10.dat
Xponge/forcefield/amber/parm19.dat
Xponge/forcefield/amber/parmbsc1.frcmod
Xponge/forcefield/amber/rsff2c.py
Xponge/forcefield/amber/spce.mol2
Xponge/forcefield/amber/spce.py
Xponge/forcefield/amber/tip3p.mol2
Xponge/forcefield/amber/tip3p.py
Xponge/forcefield/amber/tip4p.py
Xponge/forcefield/amber/tip4pew.mol2
Xponge/forcefield/amber/tip4pew.py
Xponge/forcefield/amber/glycam_06j/GLYCAM_06j.dat
Xponge/forcefield/amber/glycam_06j/__init__.py
Xponge/forcefield/amber/glycam_06j/d_furanose.mol2
Xponge/forcefield/amber/glycam_06j/d_furanose.py
Xponge/forcefield/amber/glycam_06j/d_pyranose.mol2
Xponge/forcefield/amber/glycam_06j/d_pyranose.py
Xponge/forcefield/amber/glycam_06j/glycoprotein.mol2
Xponge/forcefield/amber/glycam_06j/glycoprotein.py
Xponge/forcefield/amber/glycam_06j/l_furanose.mol2
Xponge/forcefield/amber/glycam_06j/l_furanose.py
Xponge/forcefield/amber/glycam_06j/l_pyranose.mol2
Xponge/forcefield/amber/glycam_06j/l_pyranose.py
Xponge/forcefield/amber/glycam_06j/terminal.mol2
Xponge/forcefield/base/__init__.py
Xponge/forcefield/base/angle_base.py
Xponge/forcefield/base/bond_base.py
Xponge/forcefield/base/charge_base.py
Xponge/forcefield/base/cmap_base.py
Xponge/forcefield/base/dihedral_base.py
Xponge/forcefield/base/exclude_base.py
Xponge/forcefield/base/improper_base.py
Xponge/forcefield/base/lj_base.py
Xponge/forcefield/base/mass_base.py
Xponge/forcefield/base/nb14_base.py
Xponge/forcefield/base/nb14_extra_base.py
Xponge/forcefield/base/soft_bond_base.py
Xponge/forcefield/base/ub_angle_base.py
Xponge/forcefield/base/virtual_atom_base.py
Xponge/forcefield/charmm27/__init__.py
Xponge/forcefield/charmm27/atomic_ions.mol2
Xponge/forcefield/charmm27/cmap.itp
Xponge/forcefield/charmm27/ffbonded.itp
Xponge/forcefield/charmm27/ffnonbonded.itp
Xponge/forcefield/charmm27/forcefield.itp
Xponge/forcefield/charmm27/protein.mol2
Xponge/forcefield/charmm27/protein.py
Xponge/forcefield/charmm27/tip3p.mol2
Xponge/forcefield/charmm27/tip3p.py
Xponge/forcefield/charmm27/tips3p.py
Xponge/forcefield/special/__init__.py
Xponge/forcefield/special/fep.py
Xponge/forcefield/special/gb.py
Xponge/forcefield/special/min.py
Xponge/helper/__init__.py
Xponge/helper/math.py
Xponge/helper/namespace.py
Xponge/helper/rdkit.py
Xponge/mdrun/BIN_PATH.dat
Xponge/mdrun/__init__.py
Xponge/mdrun/__main__.py
Xponge/tools/__init__.py
Xponge/tools/ti.py