##fileformat=VCFv4.2
##FILTER=<ID=PASS,Description="All filters passed">
##source=iVar
##contig=<ID=NC_063383.1,length=197209>
##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth">
##FILTER=<ID=ft,Description="Fisher's exact test of variant frequency compared to mean error rate, p-value > 0.05">
##FILTER=<ID=sb,Description="Strand-bias fisher-test p-value < 0.05">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=REF_DP,Number=1,Type=Integer,Description="Depth of reference base">
##FORMAT=<ID=REF_RV,Number=1,Type=Integer,Description="Depth of reference base on reverse reads">
##FORMAT=<ID=REF_QUAL,Number=1,Type=Integer,Description="Mean quality of reference base">
##FORMAT=<ID=ALT_DP,Number=1,Type=Integer,Description="Depth of alternate base">
##FORMAT=<ID=ALT_RV,Number=1,Type=Integer,Description="Depth of alternate base on reverse reads">
##FORMAT=<ID=ALT_QUAL,Number=1,Type=Integer,Description="Mean quality of alternate base">
##FORMAT=<ID=ALT_FREQ,Number=1,Type=Float,Description="Frequency of alternate base">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	Sample1
NC_063383.1	592	.	ATTT	A	.	PASS	DP=127	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:112:33:32:99:0:20:0.779528
NC_063383.1	1262	.	G	A	.	PASS	DP=1854	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:0:0:0:1854:898:33:1
NC_063383.1	2591	.	G	A	.	PASS	DP=1824	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:0:0:0:1824:1011:33:1
NC_063383.1	3111	.	G	A	.	PASS	DP=1135	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:2:1:34:1133:652:33:0.998238
NC_063383.1	3431	.	C	T	.	PASS	DP=1161	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:15:8:34:1146:537:33:0.98708
NC_063383.1	3522	.	G	A	.	PASS	DP=1422	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:2:1:34:1420:776:33:0.998594
NC_063383.1	3818	.	C	T	.	PASS	DP=1137	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:0:0:0:1137:487:33:1
NC_063383.1	7771	.	C	T	.	PASS	DP=1370	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:0:0:0:1370:758:33:1
NC_063383.1	14000	.	G	T	.	PASS	DP=472	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:0:0:0:472:234:33:1
NC_063383.1	15428	.	G	A	.	PASS	DP=735	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:0:0:0:735:401:33:1
NC_063383.1	18769	.	A	G	.	PASS	DP=244	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:1:0:34:243:121:33:0.995902
NC_063383.1	21723	.	G	A	.	PASS	DP=424	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:2:1:30:422:175:33:0.995283
NC_063383.1	23564	.	C	T	.	PASS	DP=925	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:0:0:0:925:435:33:1
NC_063383.1	23727	.	G	A	.	PASS	DP=849	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:2:0:34:847:386:33:0.997644
NC_063383.1	25661	.	G	A	.	PASS	DP=320	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:0:0:0:320:168:32:1
NC_063383.1	28175	.	T	C	.	PASS	DP=508	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:0:0:0:508:248:33:1
NC_063383.1	28887	.	C	T	.	PASS	DP=170	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:0:0:0:170:81:33:1
NC_063383.1	30367	.	G	A	.	PASS	DP=670	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:0:0:0:670:380:33:1
NC_063383.1	31053	.	G	A	.	PASS	DP=391	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:0:0:0:391:197:33:1
NC_063383.1	34459	.	G	A	.	PASS	DP=975	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:0:0:0:975:467:33:1
NC_063383.1	37202	.	G	A	.	PASS	DP=184	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:0:0:0:184:103:33:1
NC_063383.1	38360	.	G	A	.	PASS	DP=816	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:0:0:0:816:383:33:1
NC_063383.1	38662	.	C	T	.	PASS	DP=639	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:0:0:0:639:321:33:1
NC_063383.1	39119	.	C	T	.	PASS	DP=152	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:0:0:0:152:64:33:1
NC_063383.1	39139	.	C	T	.	PASS	DP=206	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:0:0:0:205:98:33:0.995146
NC_063383.1	52885	.	G	A	.	PASS	DP=403	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:0:0:0:403:185:33:1
NC_063383.1	54117	.	G	A	.	PASS	DP=408	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:0:0:0:408:230:33:1
NC_063383.1	54635	.	G	A	.	PASS	DP=541	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:0:0:0:541:279:33:1
NC_063383.1	64297	.	G	A	.	PASS	DP=970	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:0:0:0:970:495:33:1
NC_063383.1	72362	.	C	T	.	PASS	DP=665	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:2:1:34:663:303:33:0.996992
NC_063383.1	73066	.	C	T	.	PASS	DP=547	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:0:0:0:547:256:33:1
NC_063383.1	73239	.	G	A	.	PASS	DP=432	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:0:0:0:432:246:33:1
NC_063383.1	74205	.	G	A	.	PASS	DP=1226	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:0:0:0:1226:676:33:1
NC_063383.1	77383	.	G	A	.	PASS	DP=202	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:0:0:0:202:102:33:1
NC_063383.1	81275	.	G	A	.	PASS	DP=470	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:0:0:0:470:245:32:1
NC_063383.1	81977	.	A	G	.	PASS	DP=636	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:0:0:0:636:316:33:1
NC_063383.1	82373	.	C	T	.	PASS	DP=1078	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:0:0:0:1078:490:33:1
NC_063383.1	82451	.	G	A	.	PASS	DP=865	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:0:0:0:865:465:33:1
NC_063383.1	83326	.	C	T	.	PASS	DP=674	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:0:0:0:674:304:33:1
NC_063383.1	84587	.	C	T	.	PASS	DP=1449	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:0:0:0:1448:678:33:0.99931
NC_063383.1	87230	.	G	A	.	PASS	DP=114	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:0:0:0:114:63:33:1
NC_063383.1	87297	.	G	A	.	PASS	DP=303	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:0:0:0:303:150:33:1
NC_063383.1	91728	.	G	A	.	PASS	DP=242	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:0:0:0:242:119:33:1
NC_063383.1	95034	.	G	A	.	PASS	DP=397	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:0:0:0:396:197:33:0.997481
NC_063383.1	100261	.	A	G	.	PASS	DP=183	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:0:0:0:183:81:33:1
NC_063383.1	119296	.	C	T	.	PASS	DP=160	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:0:0:0:160:79:33:1
NC_063383.1	121320	.	C	T	.	PASS	DP=687	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:0:0:0:687:341:33:1
NC_063383.1	124130	.	G	A	.	PASS	DP=745	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:0:0:0:745:376:33:1
NC_063383.1	124674	.	G	A	.	PASS	DP=160	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:0:0:0:160:95:33:1
NC_063383.1	125249	.	G	A	.	PASS	DP=580	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:0:0:0:580:250:33:1
NC_063383.1	128698	.	C	T	.	PASS	DP=523	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:0:0:0:523:261:33:1
NC_063383.1	133163	.	GCAATCTTTCT	G	.	PASS	DP=611	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:587:273:33:523:0:20:0.855974
NC_063383.1	136512	.	AATC	A	.	PASS	DP=934	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:832:448:33:284:0:20:0.304069
NC_063383.1	146889	.	A	T	.	ft	DP=16	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:12:3:33:4:1:34:0.25
NC_063383.1	148412	.	G	A	.	PASS	DP=509	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:0:0:0:509:224:33:1
NC_063383.1	150469	.	C	T	.	PASS	DP=504	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:0:0:0:504:251:33:1
NC_063383.1	150584	.	T	TG	.	PASS	DP=187	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:179:108:33:52:0:20:0.278075
NC_063383.1	151461	.	A	C	.	PASS	DP=177	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:0:0:0:177:85:33:1
NC_063383.1	154408	.	T	C	.	PASS	DP=240	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:0:0:0:240:118:33:1
NC_063383.1	155795	.	G	A	.	PASS	DP=207	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:0:0:0:207:125:32:1
NC_063383.1	162243	.	G	A	.	PASS	DP=2682	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:0:0:0:2682:1477:33:1
NC_063383.1	162331	.	C	T	.	PASS	DP=2438	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:0:0:0:2438:1391:33:1
NC_063383.1	164832	.	C	T	.	PASS	DP=771	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:0:0:0:771:378:33:1
NC_063383.1	168120	.	C	T	.	PASS	DP=454	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:0:0:0:454:276:33:1
NC_063383.1	170262	.	G	A	.	PASS	DP=1435	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:0:0:0:1435:698:33:1
NC_063383.1	171808	.	C	T	.	PASS	DP=1431	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:1:1:34:1430:704:33:0.999301
NC_063383.1	178133	.	G	A	.	PASS	DP=267	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:0:0:0:267:134:33:1
NC_063383.1	181980	.	G	A	.	PASS	DP=568	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:0:0:0:568:282:33:1
NC_063383.1	183519	.	C	T	.	PASS	DP=3683	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:0:0:0:3682:2072:33:0.999728
NC_063383.1	186578	.	G	A	.	PASS	DP=773	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:0:0:0:773:338:33:1
NC_063383.1	187428	.	C	T	.	PASS	DP=1682	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:0:0:0:1682:711:33:1
NC_063383.1	193392	.	G	A	.	PASS	DP=1080	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:0:0:0:1080:603:33:1
NC_063383.1	193688	.	C	T	.	PASS	DP=1437	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:2:1:34:1435:643:33:0.998608
NC_063383.1	193779	.	G	A	.	PASS	DP=1203	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:24:10:34:1178:632:33:0.979219
NC_063383.1	194099	.	C	T	.	PASS	DP=1218	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:0:0:0:1218:528:33:1
NC_063383.1	194619	.	C	T	.	PASS	DP=1829	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:0:0:0:1828:794:33:0.999453
NC_063383.1	195948	.	C	T	.	PASS	DP=1949	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:0:0:0:1948:978:33:0.999487
NC_063383.1	196600	.	CAAA	C	.	PASS	DP=130	GT:REF_DP:REF_RV:REF_QUAL:ALT_DP:ALT_RV:ALT_QUAL:ALT_FREQ	1:115:63:33:100:0:20:0.769231
