CHROM	POS	REF	ALT	ANN[*].GENE	ANN[*].GENEID	ANN[*].IMPACT	ANN[*].EFFECT	ANN[*].FEATURE	ANN[*].FEATUREID	ANN[*].BIOTYPE	ANN[*].RANK	ANN[*].HGVS_C	ANN[*].HGVS_P	ANN[*].CDNA_POS	ANN[*].CDNA_LEN	ANN[*].CDS_POS	ANN[*].CDS_LEN	ANN[*].AA_POS	ANN[*].AA_LEN	ANN[*].DISTANCE	EFF[*].EFFECT	EFF[*].FUNCLASS	EFF[*].CODON	EFF[*].AA	EFF[*].AA_LEN
MN908947.3	241	C	T	orf1ab,CHR_START-orf1ab	gene-orf1ab,CHR_START-gene-orf1ab	MODIFIER,MODIFIER	upstream_gene_variant,intergenic_region	transcript,intergenic_region	TRANSCRIPT_gene-orf1ab,CHR_START-gene-orf1ab	protein_coding,.	-1,-1	c.-25C>T,n.241C>T	.,.	-1,-1	-1,-1	-1,-1	-1,-1	-1,-1	-1,-1	25,0	upstream_gene_variant,intergenic_region	NONE,NONE	c.-25C>T,n.241C>T	.,.	-1,-1
MN908947.3	853	C	T	orf1ab	gene-orf1ab	LOW	synonymous_variant	transcript	TRANSCRIPT_gene-orf1ab	protein_coding	1	c.588C>T	p.Tyr196Tyr	588	21290	588	21290	196	7095	0	synonymous_variant	NONE	c.588C>T	p.Tyr196Tyr	7095
MN908947.3	1684	C	T	orf1ab	gene-orf1ab	LOW	synonymous_variant	transcript	TRANSCRIPT_gene-orf1ab	protein_coding	1	c.1419C>T	p.Ile473Ile	1419	21290	1419	21290	473	7095	0	synonymous_variant	NONE	c.1419C>T	p.Ile473Ile	7095
MN908947.3	3037	C	T	orf1ab	gene-orf1ab	LOW	synonymous_variant	transcript	TRANSCRIPT_gene-orf1ab	protein_coding	1	c.2772C>T	p.Phe924Phe	2772	21290	2772	21290	924	7095	0	synonymous_variant	NONE	c.2772C>T	p.Phe924Phe	7095
MN908947.3	3830	A	G	orf1ab	gene-orf1ab	MODERATE	missense_variant	transcript	TRANSCRIPT_gene-orf1ab	protein_coding	1	c.3565A>G	p.Ser1189Gly	3565	21290	3565	21290	1189	7095	0	missense_variant	NONE	c.3565A>G	p.Ser1189Gly	7095
MN908947.3	4809	C	T	orf1ab	gene-orf1ab	MODERATE	missense_variant	transcript	TRANSCRIPT_gene-orf1ab	protein_coding	1	c.4544C>T	p.Ser1515Phe	4544	21290	4544	21290	1515	7095	0	missense_variant	NONE	c.4544C>T	p.Ser1515Phe	7095
MN908947.3	5263	T	C	orf1ab	gene-orf1ab	LOW	synonymous_variant	transcript	TRANSCRIPT_gene-orf1ab	protein_coding	1	c.4998T>C	p.Ser1666Ser	4998	21290	4998	21290	1666	7095	0	synonymous_variant	NONE	c.4998T>C	p.Ser1666Ser	7095
MN908947.3	6145	C	T	orf1ab	gene-orf1ab	LOW	synonymous_variant	transcript	TRANSCRIPT_gene-orf1ab	protein_coding	1	c.5880C>T	p.Phe1960Phe	5880	21290	5880	21290	1960	7095	0	synonymous_variant	NONE	c.5880C>T	p.Phe1960Phe	7095
MN908947.3	6676	T	A	orf1ab	gene-orf1ab	LOW	synonymous_variant	transcript	TRANSCRIPT_gene-orf1ab	protein_coding	1	c.6411T>A	p.Thr2137Thr	6411	21290	6411	21290	2137	7095	0	synonymous_variant	NONE	c.6411T>A	p.Thr2137Thr	7095
MN908947.3	7060	T	C	orf1ab	gene-orf1ab	LOW	synonymous_variant	transcript	TRANSCRIPT_gene-orf1ab	protein_coding	1	c.6795T>C	p.Gly2265Gly	6795	21290	6795	21290	2265	7095	0	synonymous_variant	NONE	c.6795T>C	p.Gly2265Gly	7095
MN908947.3	7420	C	T	orf1ab	gene-orf1ab	LOW	synonymous_variant	transcript	TRANSCRIPT_gene-orf1ab	protein_coding	1	c.7155C>T	p.Ile2385Ile	7155	21290	7155	21290	2385	7095	0	synonymous_variant	NONE	c.7155C>T	p.Ile2385Ile	7095
MN908947.3	7945	C	T	orf1ab	gene-orf1ab	LOW	synonymous_variant	transcript	TRANSCRIPT_gene-orf1ab	protein_coding	1	c.7680C>T	p.Tyr2560Tyr	7680	21290	7680	21290	2560	7095	0	synonymous_variant	NONE	c.7680C>T	p.Tyr2560Tyr	7095
MN908947.3	8326	C	T	orf1ab	gene-orf1ab	LOW	synonymous_variant	transcript	TRANSCRIPT_gene-orf1ab	protein_coding	1	c.8061C>T	p.Asp2687Asp	8061	21290	8061	21290	2687	7095	0	synonymous_variant	NONE	c.8061C>T	p.Asp2687Asp	7095
MN908947.3	8387	A	G	orf1ab	gene-orf1ab	MODERATE	missense_variant	transcript	TRANSCRIPT_gene-orf1ab	protein_coding	1	c.8122A>G	p.Asn2708Asp	8122	21290	8122	21290	2708	7095	0	missense_variant	NONE	c.8122A>G	p.Asn2708Asp	7095
MN908947.3	9526	G	T	orf1ab	gene-orf1ab	MODERATE	missense_variant	transcript	TRANSCRIPT_gene-orf1ab	protein_coding	1	c.9261G>T	p.Met3087Ile	9261	21290	9261	21290	3087	7095	0	missense_variant	NONE	c.9261G>T	p.Met3087Ile	7095
MN908947.3	12795	G	A	orf1ab	gene-orf1ab	MODERATE	missense_variant	transcript	TRANSCRIPT_gene-orf1ab	protein_coding	1	c.12530G>A	p.Gly4177Glu	12530	21290	12530	21290	4177	7095	0	missense_variant	NONE	c.12530G>A	p.Gly4177Glu	7095
MN908947.3	13114	T	C	orf1ab	gene-orf1ab	LOW	synonymous_variant	transcript	TRANSCRIPT_gene-orf1ab	protein_coding	1	c.12849T>C	p.Tyr4283Tyr	12849	21290	12849	21290	4283	7095	0	synonymous_variant	NONE	c.12849T>C	p.Tyr4283Tyr	7095
MN908947.3	14245	G	A	orf1ab	gene-orf1ab	LOW	synonymous_variant	transcript	TRANSCRIPT_gene-orf1ab	protein_coding	1	c.13980G>A	p.Gly4660Gly	13980	21290	13980	21290	4660	7095	0	synonymous_variant	NONE	c.13980G>A	p.Gly4660Gly	7095
MN908947.3	14408	C	T	orf1ab	gene-orf1ab	LOW	synonymous_variant	transcript	TRANSCRIPT_gene-orf1ab	protein_coding	1	c.14143C>T	p.Leu4715Leu	14143	21290	14143	21290	4715	7095	0	synonymous_variant	NONE	c.14143C>T	p.Leu4715Leu	7095
MN908947.3	15480	C	A	orf1ab	gene-orf1ab	MODERATE	missense_variant	transcript	TRANSCRIPT_gene-orf1ab	protein_coding	1	c.15215C>A	p.Pro5072His	15215	21290	15215	21290	5072	7095	0	missense_variant	NONE	c.15215C>A	p.Pro5072His	7095
MN908947.3	17066	A	G	orf1ab,S	gene-orf1ab,gene-S	MODERATE,MODIFIER	missense_variant,upstream_gene_variant	transcript,transcript	TRANSCRIPT_gene-orf1ab,TRANSCRIPT_gene-S	protein_coding,protein_coding	1,-1	c.16801A>G,c.-4497A>G	p.Ile5601Val,.	16801,-1	21290,-1	16801,-1	21290,-1	5601,-1	7095,-1	0,4497	missense_variant,upstream_gene_variant	NONE,NONE	c.16801A>G,c.-4497A>G	p.Ile5601Val,.	7095,-1
MN908947.3	17334	G	T	orf1ab,S	gene-orf1ab,gene-S	MODERATE,MODIFIER	missense_variant,upstream_gene_variant	transcript,transcript	TRANSCRIPT_gene-orf1ab,TRANSCRIPT_gene-S	protein_coding,protein_coding	1,-1	c.17069G>T,c.-4229G>T	p.Arg5690Leu,.	17069,-1	21290,-1	17069,-1	21290,-1	5690,-1	7095,-1	0,4229	missense_variant,upstream_gene_variant	NONE,NONE	c.17069G>T,c.-4229G>T	p.Arg5690Leu,.	7095,-1
MN908947.3	18473	A	C	orf1ab,S	gene-orf1ab,gene-S	MODERATE,MODIFIER	missense_variant,upstream_gene_variant	transcript,transcript	TRANSCRIPT_gene-orf1ab,TRANSCRIPT_gene-S	protein_coding,protein_coding	1,-1	c.18208A>C,c.-3090A>C	p.Asn6070His,.	18208,-1	21290,-1	18208,-1	21290,-1	6070,-1	7095,-1	0,3090	missense_variant,upstream_gene_variant	NONE,NONE	c.18208A>C,c.-3090A>C	p.Asn6070His,.	7095,-1
MN908947.3	21992	TATTACC	T	S,ORF3a,E,M,orf1ab	gene-S,gene-ORF3a,gene-E,gene-M,gene-orf1ab	MODERATE,MODIFIER,MODIFIER,MODIFIER,MODIFIER	disruptive_inframe_deletion,upstream_gene_variant,upstream_gene_variant,upstream_gene_variant,downstream_gene_variant	transcript,transcript,transcript,transcript,transcript	TRANSCRIPT_gene-S,TRANSCRIPT_gene-ORF3a,TRANSCRIPT_gene-E,TRANSCRIPT_gene-M,TRANSCRIPT_gene-orf1ab	protein_coding,protein_coding,protein_coding,protein_coding,protein_coding	1,-1,-1,-1,-1	c.432_437delTTACCA,c.-3400_-3395delATTACC,c.-4252_-4247delATTACC,c.-4530_-4525delATTACC,c.*438_*443delATTACC	p.Tyr145_His146del,.,.,.,.	432,-1,-1,-1,-1	3822,-1,-1,-1,-1	432,-1,-1,-1,-1	3822,-1,-1,-1,-1	144,-1,-1,-1,-1	1273,-1,-1,-1,-1	0,3400,4252,4530,438	disruptive_inframe_deletion,upstream_gene_variant,upstream_gene_variant,upstream_gene_variant,downstream_gene_variant	NONE,NONE,NONE,NONE,NONE	c.432_437delTTACCA,c.-3400_-3395delATTACC,c.-4252_-4247delATTACC,c.-4530_-4525delATTACC,c.*438_*443delATTACC	p.Tyr145_His146del,.,.,.,.	1273,-1,-1,-1,-1
