Metadata-Version: 2.4
Name: xirescore
Version: 1.0.0a19
Summary: A corss-link mass spectrometry rescoring tool
Home-page: https://github.com/Rappsilber-Laboratory/xiRescore
Author: Falk Boudewijn Schimweg
Author-email: "Falk B. Schimweg" <git@falk.schimweg.de>
License: GNU Affero General Public License v3 or later (AGPLv3+)
Project-URL: Homepage, https://github.com/Rappsilber-Laboratory/xiRescore
Project-URL: Issues, https://github.com/Rappsilber-Laboratory/xiRescore/issues
Project-URL: Documentation, https://xirescore.readthedocs.io/
Keywords: proteomics,rescoring,crosslink,mass spectrometry
Classifier: Development Status :: 2 - Pre-Alpha
Classifier: Intended Audience :: Developers
Classifier: License :: OSI Approved :: GNU Affero General Public License v3 or later (AGPLv3+)
Classifier: Natural Language :: English
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.9
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Classifier: Programming Language :: Python :: 3.12
Requires-Python: >=3.9
Description-Content-Type: text/x-rst
License-File: LICENSE
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Requires-Dist: pandas>=2.0.0
Requires-Dist: numpy>=1.7.2
Requires-Dist: PyYAML~=6.0
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Requires-Dist: xgboost~=1.7.5
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Requires-Dist: imblearn~=0.0
Requires-Dist: py~=1.11.0
Requires-Dist: networkx~=3.1
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Requires-Dist: threadpoolctl>=3.5.0
Requires-Dist: deepmerge~=1.1.0
Requires-Dist: SQLAlchemy~=2.0.30
Requires-Dist: psycopg2>=2.9
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Requires-Dist: fastparquet>=2022.11.0
Requires-Dist: pyarrow
Requires-Dist: scipy>=1.0.1
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Dynamic: author
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Dynamic: home-page
Dynamic: license-file
Dynamic: requires-dist
Dynamic: requires-python

=========
xiRescore
=========


.. image:: https://img.shields.io/pypi/v/xirescore
        :target: https://pypi.python.org/pypi/xirescore
        :alt: PyPI - Package Version

.. image:: https://img.shields.io/pypi/pyversions/xirescore
        :target: https://pypi.python.org/pypi/xirescore
        :alt: PyPI - Python Version

.. image:: https://readthedocs.org/projects/xirescore/badge/
        :target: https://xirescore.readthedocs.io/en/
        :alt: Documentation Status

.. image:: https://img.shields.io/pypi/l/xirescore
        :target: https://github.com/Rappsilber-Laboratory/xiRescore/blob/main/LICENSE
        :alt: PyPI - License

.. image:: https://img.shields.io/badge/DOI-todo-gray
        :target: https://github.com/Rappsilber-Laboratory/xiRescore/
        :alt: DOI



A machine learning based approach to rescore crosslinked spectrum matches (CSMs).


* Free software: GNU Affero General Public License v3 or later (AGPLv3+)
* Documentation: https://xirescore.readthedocs.io.


Credits
-------

This package was created with Cookiecutter_ and the `audreyr/cookiecutter-pypackage`_ project template.

.. _Cookiecutter: https://github.com/audreyr/cookiecutter
.. _`audreyr/cookiecutter-pypackage`: https://github.com/audreyr/cookiecutter-pypackage
