MANIFEST.in
README.md
setup.py
XICRA/__init__.py
XICRA.egg-info/PKG-INFO
XICRA.egg-info/SOURCES.txt
XICRA.egg-info/dependency_links.txt
XICRA.egg-info/requires.txt
XICRA.egg-info/top_level.txt
XICRA/config/VERSION
XICRA/config/__init__.py
XICRA/config/extern_progs.py
XICRA/config/set_config.py
XICRA/config/R/R_dependencies.csv
XICRA/config/R/check_install_system.R
XICRA/config/python/python_requirement_summary.txt
XICRA/config/python/python_requirements.csv
XICRA/config/python/python_requirements.txt
XICRA/config/software/dependencies.csv
XICRA/config/software/installer.sh
XICRA/config/software/soft_dependencies.csv
XICRA/modules/__init__.py
XICRA/modules/biotype.py
XICRA/modules/citation.py
XICRA/modules/config.py
XICRA/modules/help_XICRA.py
XICRA/modules/join.py
XICRA/modules/miRNA.py
XICRA/modules/prep.py
XICRA/modules/qc.py
XICRA/modules/tRNA.py
XICRA/modules/test.py
XICRA/modules/trimm.py
XICRA/other_tools/__init__.py
XICRA/other_tools/tools.py
XICRA/scripts/MINTMap_caller.py
XICRA/scripts/RNAbiotype.py
XICRA/scripts/__init__.py
XICRA/scripts/cutadapt_caller.py
XICRA/scripts/fastqc_caller.py
XICRA/scripts/generate_DE.py
XICRA/scripts/mapReads.py
XICRA/scripts/miraligner_caller.py
XICRA/scripts/mirtop_caller.py
XICRA/scripts/multiQC_report.py
XICRA/scripts/optimir_caller.py
XICRA/scripts/sRNAbench_caller.py
main/XICRA