Metadata-Version: 2.1
Name: XICRA
Version: 0.9.0
Summary: UNKNOWN
Home-page: https://github.com/HCGB-IGTP/XICRA/tree/master/XICRA_pip
Author: Jose F. Sanchez-Herrero
Author-email: jfbioinformatics@gmail.com
License: MIT License
Description: # XICRA: Small RNAseq pipeline for paired-end reads
        
        ## Description
        
        XICRA is a python pipeline developed in multiple separated modules that it is designed to take 
        paired end fastq reads, trim adapters and low-quality base pairs positions, and merge reads (R1 & R2) 
        that overlap. Using joined reads it describes all major RNA biotypes present in the samples including 
        miRNA and isomiRs, tRNA fragments (tRFs) and piwi associated RNAs (piRNAs).
        
        So far, XICRA produces a miRNA analysis at the isomiR level using joined reads, multiple software at the 
        user selection and following a standardization procedure. Results are generated for each sample analyzed and 
        summarized for all samples in a single expression matrix. This information can be processed at the miRNA or 
        isomiR level (single sequence) but also summarizing for each isomiR variant type. This information can be 
        easily accessed using the accompanied R package XICRA.stats. Although the pipeline is designed to take 
        paired-end reads, it also accepts single-end reads.
        
        ## Installation
        
        XICRA is available in the Python Package Index ([pip](https://pypi.org/)).
        
        To install type: 
        
        `pip install XICRA`
        
        ## Documentation
        
        See a full documentation, user guid and manual in [here](https://readthedocs.org/)
        
        ## License 
        MIT License
        Copyright (c) 2020 HCGB-IGTP
        
        See additional details [here](LICENSE)
        
        ## Citation
        Sanchez-Herrero et. al .... 2020
        
        ## Authors
        Antonio Luna de Haro (v0.1)
        Jose F Sanchez-Herrero (v1.0)	
        
Platform: UNKNOWN
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Description-Content-Type: text/markdown
