.travis.yml
AUTHORS.rst
CONTRIBUTING.rst
HISTORY.rst
LICENSE
MANIFEST.in
Makefile
README.md
README.rst
pyproject.toml
requirements-dev.txt
requirements.txt
setup.cfg
setup.py
tox.ini
.github/ISSUE_TEMPLATE.md
.github/workflows/ci.yml
.idea/misc.xml
.idea/modules.xml
.idea/other.xml
.idea/vcs.xml
.idea/wsireg.iml
.idea/inspectionProfiles/Project_Default.xml
.idea/inspectionProfiles/profiles_settings.xml
docs/Makefile
docs/authors.rst
docs/conf.py
docs/contributing.rst
docs/history.rst
docs/index.rst
docs/installation.rst
docs/make.bat
docs/readme.rst
docs/usage.rst
docs/assets/wsireg-logo-crop.png
docs/assets/wsireg-logo-crop.svg
docs/modules/im_utils.rst
docs/modules/index.rst
docs/modules/reg_image.rst
docs/modules/reg_shapes.rst
docs/modules/reg_utils.rst
docs/modules/shape_utils.rst
docs/modules/tform_utils.rst
docs/modules/wsireg2d.rst
examples/multimodal_registration_vizarr.ipynb
reg_templates/basic_template.yaml
tests/__init__.py
tests/conftest.py
tests/test_im_read.py
tests/test_im_utils.py
tests/test_reg_image.py
tests/test_reg_transform_seq.py
tests/test_shapes.py
tests/test_writer.py
tests/test_wsireg.py
tests/test_wsireg_config.py
tests/fixtures/__init__.py
tests/fixtures/im_fixtures.py
tests/fixtures/large_nl_tform.pkl
tests/fixtures/mc_im_8bit.tiff
tests/fixtures/polygons.geojson
tests/fixtures/rgb_im_8bit.tiff
tests/fixtures/sc_im_8bit.tiff
tests/fixtures/test-config1.yaml
tests/fixtures/test-config2.yaml
tests/fixtures/test-config3.yaml
tests/fixtures/test-config4.yaml
tests/fixtures/test-config5.yaml
tests/fixtures/test-tform.json
tests/fixtures/transform_fixtures.py
wsireg/__init__.py
wsireg/reg_shapes.py
wsireg/reg_transform.py
wsireg/reg_transform_seq.py
wsireg/wsireg2d.py
wsireg.egg-info/PKG-INFO
wsireg.egg-info/SOURCES.txt
wsireg.egg-info/dependency_links.txt
wsireg.egg-info/entry_points.txt
wsireg.egg-info/not-zip-safe
wsireg.egg-info/requires.txt
wsireg.egg-info/top_level.txt
wsireg/parameter_maps/__init__.py
wsireg/parameter_maps/preprocessing.py
wsireg/parameter_maps/reg_model.py
wsireg/parameter_maps/reg_params.py
wsireg/parameter_maps/transformations.py
wsireg/reg_images/__init__.py
wsireg/reg_images/aics_reg_image.py
wsireg/reg_images/czi_reg_image.py
wsireg/reg_images/loader.py
wsireg/reg_images/merge_reg_image.py
wsireg/reg_images/np_reg_image.py
wsireg/reg_images/ometiff_reg_image.py
wsireg/reg_images/reg_image.py
wsireg/reg_images/sitk_reg_image.py
wsireg/reg_images/tifffile_reg_image.py
wsireg/utils/__init__.py
wsireg/utils/config_utils.py
wsireg/utils/im_utils.py
wsireg/utils/itk_im_conversions.py
wsireg/utils/reg_utils.py
wsireg/utils/shape_utils.py
wsireg/utils/tform_conversion.py
wsireg/utils/tform_utils.py
wsireg/utils/tile_image_transform.py
wsireg/writers/__init__.py
wsireg/writers/merge_ome_tiff_writer.py
wsireg/writers/ome_tiff_writer.py