<tool id="PxMeanStdImage" name="ITKTools Mean/Standard Deviation Image" version="0.1">
  <description>A wrapper around ITK Tools, as set of simple command line tools for image analysis.</description>
  <authors>
    <author name="Hakim Achterberg" email="h.achterberg@erasmusmc.nl" url="http://www.bigr.nl/people/HakimAchterberg"/>
  </authors>
  <command version="0.3.0" url="https://github.com/ITKTools/ITKTools">
    <targets>
      <target os="windows" arch="*" paths="vfs://apps/itktools/0.3.0/install/bin" bin="pxmeanstdimage.exe"/>
      <target os="linux" arch="*" modules="itktools/0.3.0" paths="vfs://apps/itktools/0.3.0/install/bin"
              bin="pxmeanstdimage"/>
      <target os="darwin" arch="*" modules="itktools/0.3.0" paths="vfs://apps/itktools/0.3.0/install/bin"
              bin="pxmeanstdimage"/>
    </targets>
    <description>
      ITKTools v0.2.2
      This program creates a mean and standard deviation image of a set of images.
      Usage:
      pxmeanstdimage
      -in list of inputFilenames
      -inMask list of inputMaskFilenames
      [-outmean] outputFilename for mean image; always written as float
      [-outstd] outputFilename for standard deviation image; always written as float,
      [-popstd] population standard deviation flag; if provided, use population standard deviation
      rather than sample standard deviation (divide by N instead of N-1)
      [-z] compression flag; if provided, the output image is compressed
      Supported: 2D, 3D, (unsigned) char, (unsigned) short, float, double.
    </description>
    <license/>
    <authors>
      <author name="Hakim Achterberg" email="h.achterberg@erasmusmc.nl"
              url="http://www.bigr.nl/people/HakimAchterberg"/>
      <author name="Stefan Klein" email="s.klein@erasmusmc.nl" url="http://www.bigr.nl/people/StefanKlein"/>
      <author name="Marius Staring" email="m.staring@lumc.nl" url="http://elastix.isi.uu.nl/marius/index.html"/>
    </authors>
  </command>
  <interface>
    <inputs>
      <input id="images" name="Input Images" datatype="ITKImageFile" prefix="-in" cardinality="1-*" required="true"/>
      <input id="masks" name="Input Masks" datatype="ITKImageFile" prefix="-inMask" cardinality="as:images"
             required="false"/>
      <input id="compression_flag" name="Compression Flag" datatype="String" prefix="-z" cardinality="0" required="false"/>
      <input id="population_std_flag" name="Population Standard Deviation Flag" datatype="String" prefix="-popstd"
             cardinality="0" required="false"/>
    </inputs>
    <outputs>
      <output id="mean_image" name="output mean image" datatype="ITKImageFile" prefix="-outmean" cardinality="1"/>
      <output id="std_image" name="output standard deviation image" datatype="ITKImageFile" prefix="-outstd" cardinality="1"/>
    </outputs>
  </interface>
  <requirements/>
  <tests/>
  <help>
  </help>
  <cite>
  </cite>
  <references/>
</tool>
