<tool id="Segmentix" name="Segmentix" version="1.0">
    <description>Segmentation toolbox.</description>
    <authors>
      <author name="Martijn Starmans" email="m.starmans@erasmusmc.nl" url="http://www.bigr.nl/people/MartijnStarmans" />
    </authors>
  <command version="1.0" url="" >
    <targets>
      <target os="*" arch="*" interpreter="python" paths='bin/' bin="segmentix_tool.py" />
    </targets>
    <description>
       Segmentix.py image metadata segmentation parameters
       output = Radiomics features
    </description>
    <authors>
      <author name="Martijn Starmans" email="m.starmans@erasmusmc.nl" url="http://www.bigr.nl/people/MartijnStarmans" />
    </authors>
  </command>
  <repository />
  <interface>
    <inputs>
        <input id="image" name="image" datatype="ITKImageFile" prefix="--im" cardinality="1" repeat_prefix="false" required="false" />
        <input id="metadata" name="metadata" datatype="DicomImageFile" prefix="--md" cardinality="1" repeat_prefix="false" required="false" />
        <input id="segmentation_in" name="input segmentation" datatype="ITKImageFile" prefix="--segin" cardinality="1" repeat_prefix="false" required="false" />
        <input id="mask" name="mask" datatype="ITKImageFile" prefix="--mask" cardinality="1" repeat_prefix="false" required="false" />
        <input id="parameters" name="parameters" datatype="ParameterFile" prefix="--para" cardinality="1-*" repeat_prefix="false" required="false" />
     </inputs>
    <outputs>
      <output id="segmentation_out" name="Output segmentation" datatype="ITKImageFile" cardinality="as:segmentation_in" nospace="False" order="0" prefix="--segout" required="false"/>
    </outputs>
  </interface>
  <requirements />
  <tests />
  <help> usage: Segmentix.py [-h] [-im IMAGE.ITKIM] [-pi Pinfo.txt] [-seg SEGMENTATION.ITKIM] -para PARAMETERS.ini -out OUTPUT.ITKIM
  </help>
  <cite>
  </cite>
  <references />
</tool>
