pysam>=0.18.0
pyfaidx>=0.5.5.2
networkx
biopython>=1.73
scipy
xopen>=1.2.0
pulp>=2

[dev]
Cython
pytest
hypothesis
sphinx>=4.4
sphinx-issues
pysam-stubs

[docs]
sphinx<7
sphinx_rtd_theme
sphinx-issues
sphinx_better_subsection
