MANIFEST.in
README.md
setup.cfg
setup.py
versioneer.py
wgs_analysis/__init__.py
wgs_analysis/_version.py
wgs_analysis/refgenome.py
wgs_analysis.egg-info/PKG-INFO
wgs_analysis.egg-info/SOURCES.txt
wgs_analysis.egg-info/dependency_links.txt
wgs_analysis.egg-info/top_level.txt
wgs_analysis/algorithms/__init__.py
wgs_analysis/algorithms/cnv.py
wgs_analysis/algorithms/merge.py
wgs_analysis/algorithms/position.py
wgs_analysis/algorithms/rearrangement.py
wgs_analysis/algorithms/tree.py
wgs_analysis/annotation/__init__.py
wgs_analysis/annotation/cnv.py
wgs_analysis/annotation/position.py
wgs_analysis/annotation/rearrangement.py
wgs_analysis/annotation/snv.py
wgs_analysis/data/GRCh37-lite.fa.fai
wgs_analysis/data/GRCh38.fa.fai
wgs_analysis/data/signatures_probabilities.tsv
wgs_analysis/experiments/__init__.py
wgs_analysis/experiments/blat_server.py
wgs_analysis/experiments/design_break_primers.py
wgs_analysis/experiments/design_experiment.py
wgs_analysis/experiments/design_primers.py
wgs_analysis/experiments/design_snv_primers.py
wgs_analysis/experiments/design_utils.py
wgs_analysis/plots/__init__.py
wgs_analysis/plots/circos.py
wgs_analysis/plots/clones.py
wgs_analysis/plots/cnv.py
wgs_analysis/plots/colors.py
wgs_analysis/plots/general.py
wgs_analysis/plots/heatmap.py
wgs_analysis/plots/positions.py
wgs_analysis/plots/rearrangement.py
wgs_analysis/plots/singlecell.py
wgs_analysis/plots/snv.py
wgs_analysis/plots/trees.py
wgs_analysis/plots/utils.py
wgs_analysis/snvs/__init__.py
wgs_analysis/snvs/mutsig.py
wgs_analysis/tables/__init__.py
wgs_analysis/tables/clones.py
wgs_analysis/tables/gene_matrix.py
wgs_analysis/tables/io.py
wgs_analysis/tables/trees.py
wgs_analysis/tests/__init__.py
wgs_analysis/tests/test_breakpoint_db.py
wgs_analysis/utils/__init__.py
wgs_analysis/utils/trees.py