#
# This file is autogenerated by pip-compile
# To update, run:
#
#    pip-compile --output-file=envs/dev/requirements.txt ../geomm/requirements.in ../openmm_systems/requirements.in ./requirements.in .jubeo/requirements.in envs/dev/requirements.in envs/dev/tools.requirements.txt envs/test/requirements.in
#
--index-url https://pypi.python.org/simple/

alabaster==0.7.12         # via sphinx
apipkg==1.5               # via execnet
appdirs==1.4.3            # via virtualenv
argcomplete==1.11.1       # via -r envs/dev/requirements.in, nox
asv==0.4.1                # via -r envs/dev/requirements.in
attrs==19.3.0             # via interrogate, jsonschema, pytest
babel==2.8.0              # via sphinx
backcall==0.1.0           # via ipython
bcrypt==3.1.7             # via paramiko
bleach==3.1.4             # via nbconvert, readme-renderer
boltons==20.2.0           # via eliot
certifi==2020.4.5.1       # via requests
cffi==1.14.0              # via bcrypt, cryptography, pynacl
chardet==3.0.4            # via requests
click==7.1.1              # via -r ./requirements.in, interrogate, jubeo, pip-tools
cloudpickle==1.4.1        # via dask
colorlog==2.10.0          # via lxdock, nox
contextlib2==0.6.0.post1  # via pytest-shutil
coverage==5.1             # via -r .jubeo/requirements.in, -r envs/dev/requirements.in, pytest-cov
cryptography==2.9         # via paramiko, pylxd, secretstorage
cycler==0.10.0            # via matplotlib
dask[bag]==2.15.0         # via -r ./requirements.in
decorator==4.4.2          # via ipython, networkx, traitlets
defusedxml==0.6.0         # via nbconvert
dill==0.3.1.1             # via -r ./requirements.in
distlib==0.3.0            # via virtualenv
docutils==0.16            # via nbsphinx, pybtex-docutils, readme-renderer, sphinx
eliot==1.12.0             # via -r ./requirements.in
entrypoints==0.3          # via flake8, nbconvert
execnet==1.7.1            # via pytest-shutil
fabric==2.5.0             # via -r .jubeo/requirements.in
fancycompleter==0.9.1     # via pdbpp
filelock==3.0.12          # via virtualenv
flake8==3.7.9             # via -r envs/dev/requirements.in
fsspec==0.7.3             # via dask
git+https://github.com/ADicksonLab/geomm  # via -r ./requirements.in
ghp-import==0.5.5         # via -r .jubeo/requirements.in
gitdb==4.0.5              # via gitpython
gitpython==3.1.2          # via jubeo
gprof2dot==2019.11.30     # via pytest-profiling
h5py==2.10.0              # via -r ./requirements.in
hyperlink==19.0.0         # via jubeo
idna==2.9                 # via hyperlink, requests
imagesize==1.2.0          # via sphinx
importlib-metadata==1.6.0  # via argcomplete, jsonschema, keyring, path, pluggy, pytest, twine, virtualenv
interrogate==1.1.4        # via -r envs/dev/requirements.in
invoke==1.4.1             # via -r .jubeo/requirements.in, fabric
ipykernel==5.2.0          # via notebook
ipython-genutils==0.2.0   # via nbformat, notebook, traitlets
ipython==7.13.0           # via -r envs/dev/requirements.in, ipykernel
jedi==0.16.0              # via ipython
jeepney==0.4.3            # via keyring, secretstorage
jinja2==2.11.2            # via -r ./requirements.in, nbconvert, nbsphinx, notebook, sphinx
jsonschema==3.2.0         # via nbformat
jubeo==0.0.3a0.dev0       # via -r .jubeo/requirements.in
jupyter-client==6.1.2     # via ipykernel, notebook
jupyter-core==4.6.3       # via jupyter-client, nbconvert, nbformat, notebook
keyring==21.2.0           # via twine
kiwisolver==1.2.0         # via matplotlib
latexcodec==2.0.1         # via pybtex
lizard==1.17.3            # via -r envs/dev/requirements.in
locket==0.2.0             # via partd
lxdock==0.4.1             # via -r .jubeo/requirements.in
markupsafe==1.1.1         # via jinja2
matplotlib==3.2.1         # via -r ./requirements.in
mccabe==0.6.1             # via flake8
mdtraj==1.9.3             # via -r ../openmm_systems/requirements.in, -r ./requirements.in, openmm-systems
mistune==0.8.4            # via nbconvert
mock==4.0.2               # via pytest-shutil
more-itertools==8.2.0     # via pytest
multiprocessing-logging==0.3.1  # via -r ./requirements.in, -r envs/dev/requirements.in
nbconvert==5.6.1          # via nbsphinx, notebook
nbformat==5.0.5           # via nbconvert, nbsphinx, notebook
nbsphinx==0.6.0           # via -r envs/dev/requirements.in
networkx==2.3             # via -r ./requirements.in, interrogate
notebook==6.0.3           # via -r envs/dev/requirements.in
nox==2019.11.9            # via -r envs/dev/requirements.in
numpy==1.18.4             # via -r ../geomm/requirements.in, -r ../openmm_systems/requirements.in, -r ./requirements.in, geomm, h5py, matplotlib, mdtraj, openmm-systems, pandas, scipy
git+https://github.com/ADicksonLab/openmm_systems  # via -r ./requirements.in
oset==0.1.3               # via sphinxcontrib-bibtex
packaging==20.3           # via pytest, sphinx
pandas==1.0.3             # via -r ../openmm_systems/requirements.in, -r ./requirements.in
pandocfilters==1.4.2      # via nbconvert
paramiko==2.7.1           # via fabric
parso==0.6.2              # via jedi
partd==1.1.0              # via dask
path.py==12.4.0           # via pytest-shutil
path==13.1.0              # via path.py
pbr==5.4.5                # via pylxd
pdbpp==0.10.2             # via -r envs/dev/requirements.in
pexpect==4.8.0            # via ipython
pickleshare==0.7.5        # via ipython
pint==0.11                # via -r ../geomm/requirements.in, -r ./requirements.in, geomm
pip-tools==5.1.2          # via -r .jubeo/requirements.in
pkginfo==1.5.0.1          # via twine
pluggy==0.13.1            # via pytest
pockets==0.9.1            # via sphinxcontrib-napoleon
prometheus-client==0.7.1  # via -r ./requirements.in, notebook
prompt-toolkit==3.0.5     # via ipython
ptyprocess==0.6.0         # via pexpect, terminado
py-cpuinfo==5.0.0         # via pytest-benchmark
py==1.8.1                 # via interrogate, nox, pytest
pybtex-docutils==0.2.2    # via sphinxcontrib-bibtex
pybtex==0.22.2            # via pybtex-docutils, sphinxcontrib-bibtex
pycodestyle==2.5.0        # via flake8
pycparser==2.20           # via cffi
pyflakes==2.1.1           # via flake8
pygments==2.6.1           # via ipython, nbconvert, pdbpp, readme-renderer, sphinx
pylxd==2.2.11             # via lxdock
pympler==0.8              # via -r ./requirements.in
pynacl==1.4.0             # via paramiko
pyparsing==2.4.7          # via matplotlib, packaging
pyrepl==0.9.0             # via fancycompleter
pyrsistent==0.16.0        # via eliot, jsonschema
pytest-benchmark==3.2.3   # via -r envs/test/requirements.in
pytest-check==0.3.9       # via -r envs/test/requirements.in
pytest-cov==2.8.1         # via -r envs/test/requirements.in
git+https://github.com/salotz/pytest-datadir.git  # via -r envs/test/requirements.in
pytest-html==2.1.1        # via -r envs/test/requirements.in
pytest-metadata==1.9.0    # via pytest-html
pytest-mock==3.1.0        # via -r envs/test/requirements.in
pytest-print==0.1.3       # via -r envs/test/requirements.in
pytest-profiling==1.7.0   # via -r envs/test/requirements.in
pytest-runner==5.2        # via -r .jubeo/requirements.in, -r envs/test/requirements.in
pytest-shutil==1.7.0      # via -r envs/test/requirements.in
pytest==5.4.1             # via -r .jubeo/requirements.in, -r envs/test/requirements.in, pytest-benchmark, pytest-check, pytest-cov, pytest-datadir, pytest-html, pytest-metadata, pytest-mock, pytest-print, pytest-profiling, pytest-shutil
python-dateutil==2.8.1    # via jupyter-client, matplotlib, pandas, pylxd
python-dotenv==0.14.0     # via lxdock
pytz==2019.3              # via babel, pandas
pyyaml==3.13              # via lxdock, pybtex
pyzmq==19.0.0             # via jupyter-client, notebook
readme-renderer==25.0     # via twine
remote-pdb==2.0.0         # via -r envs/dev/requirements.in
requests-toolbelt==0.9.1  # via pylxd, twine
requests-unixsocket==0.2.0  # via pylxd
requests==2.23.0          # via pylxd, requests-toolbelt, requests-unixsocket, sphinx, twine
scipy==1.4.1              # via -r ../geomm/requirements.in, -r ../openmm_systems/requirements.in, -r ./requirements.in, geomm, mdtraj, openmm-systems
secretstorage==3.1.2      # via keyring
send2trash==1.5.0         # via notebook
six==1.14.0               # via asv, bcrypt, bleach, cryptography, cycler, eliot, h5py, jsonschema, latexcodec, packaging, pip-tools, pockets, pybtex, pybtex-docutils, pylxd, pynacl, pyrsistent, pytest-print, pytest-profiling, pytest-shutil, python-dateutil, readme-renderer, sphinxcontrib-napoleon, traitlets, virtualenv
smmap==3.0.4              # via gitdb
snowballstemmer==2.0.0    # via sphinx
sphinx==3.0.1             # via -r envs/dev/requirements.in, nbsphinx, sphinxcontrib-bibtex
sphinxcontrib-applehelp==1.0.2  # via sphinx
sphinxcontrib-bibtex==1.0.0  # via -r envs/dev/requirements.in
sphinxcontrib-devhelp==1.0.2  # via sphinx
sphinxcontrib-htmlhelp==1.0.3  # via sphinx
sphinxcontrib-jsmath==1.0.1  # via sphinx
sphinxcontrib-napoleon==0.7  # via -r envs/dev/requirements.in
sphinxcontrib-qthelp==1.0.3  # via sphinx
sphinxcontrib-serializinghtml==1.1.4  # via sphinx
tabulate==0.8.7           # via -r ./requirements.in, interrogate
termcolor==1.1.0          # via pytest-shutil
terminado==0.8.3          # via notebook
testpath==0.4.4           # via nbconvert
toml==0.10.0              # via interrogate, jubeo
toolz==0.10.0             # via dask, partd
tornado==6.0.4            # via ipykernel, jupyter-client, notebook, terminado
tqdm==4.45.0              # via twine
traitlets==4.3.3          # via ipykernel, ipython, jupyter-client, jupyter-core, nbconvert, nbformat, nbsphinx, notebook
twine==3.1.1              # via -r envs/dev/requirements.in
urllib3==1.25.8           # via requests, requests-unixsocket
versioneer==0.18          # via -r .jubeo/requirements.in
virtualenv==20.0.17       # via -r envs/dev/requirements.in, nox
voluptuous==0.11.7        # via lxdock
wcwidth==0.1.9            # via prompt-toolkit, pytest
webencodings==0.5.1       # via bleach
wheel==0.34.2             # via -r envs/dev/requirements.in
wmctrl==0.3               # via pdbpp
ws4py==0.5.1              # via pylxd
zipp==3.1.0               # via importlib-metadata
zope.interface==5.1.0     # via eliot

# The following packages are considered to be unsafe in a requirements file:
# pip
# setuptools
