AUTHORS.org
CHANGELOG.org
LICENSE
MANIFEST.in
README.org
pyproject.toml
requirements.txt
requirements_dev.txt
setup.cfg
setup.py
sphinx/Makefile
sphinx/build.sh
sphinx/conf.py
sphinx/index.rst
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sphinx/api/modules.rst
sphinx/api/wepy.analysis.contig_tree.rst
sphinx/api/wepy.analysis.network.rst
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src/wepy/__init__.py
src/wepy/hdf5.py
src/wepy/sim_manager.py
src/wepy/walker.py
src/wepy.egg-info/PKG-INFO
src/wepy.egg-info/SOURCES.txt
src/wepy.egg-info/dependency_links.txt
src/wepy.egg-info/entry_points.txt
src/wepy.egg-info/requires.txt
src/wepy.egg-info/top_level.txt
src/wepy/analysis/__init__.py
src/wepy/analysis/contig_tree.py
src/wepy/analysis/network.py
src/wepy/analysis/parents.py
src/wepy/analysis/profiles.py
src/wepy/analysis/rates.py
src/wepy/analysis/transitions.py
src/wepy/analysis/network_layouts/__init__.py
src/wepy/analysis/network_layouts/layout.py
src/wepy/analysis/network_layouts/layout_graph.py
src/wepy/analysis/network_layouts/tree.py
src/wepy/boundary_conditions/__init__.py
src/wepy/boundary_conditions/boundary.py
src/wepy/boundary_conditions/receptor.py
src/wepy/boundary_conditions/unbinding.py
src/wepy/orchestration/__init__.py
src/wepy/orchestration/cli.py
src/wepy/orchestration/configuration.py
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src/wepy/reporter/__init__.py
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src/wepy/resampling/decisions/__init__.py
src/wepy/resampling/decisions/clone_merge.py
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src/wepy/resampling/distances/distance.py
src/wepy/resampling/distances/randomwalk.py
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src/wepy/resampling/resamplers/__init__.py
src/wepy/resampling/resamplers/resampler.py
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src/wepy/util/__init__.py
src/wepy/util/json_top.py
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src/wepy/util/util.py
src/wepy/work_mapper/__init__.py
src/wepy/work_mapper/mapper.py
src/wepy/work_mapper/worker.py