Index

_

__post_init__() (HeudiconvDefaults method) (HeudiconvInputs method) (QSIParcInputs method) (QSIPrepDefaults method) (QSIPrepInputs method) (QSIReconDefaults method) (QSIReconInputs method)

A

add_intended_for_to_fmaps() (in module voxelops.utils.bids) anatomical_template (QSIPrepDefaults attribute)

atlases (QSIParcInputs attribute) (QSIReconDefaults attribute) (QSIReconInputs attribute)

B

background_label (QSIParcDefaults attribute) bids (HeudiconvDefaults attribute) bids_dir (HeudiconvOutputs attribute) (QSIPrepInputs attribute)

bids_filters (QSIPrepInputs attribute) bids_validator (HeudiconvDefaults attribute) BIDSValidationError

C

converter (HeudiconvDefaults attribute)

D

dataset_description (HeudiconvOutputs attribute) datasets (QSIReconInputs attribute) DependencyError dicom_dir (HeudiconvInputs attribute)

docker_image (HeudiconvDefaults attribute) (QSIPrepDefaults attribute) (QSIReconDefaults attribute) DockerExecutionError

F

figures_dir (QSIPrepOutputs attribute) force (QSIParcDefaults attribute) FreeSurferLicenseError from_inputs() (HeudiconvOutputs class method) (QSIParcOutputs class method) (QSIPrepOutputs class method) (QSIReconOutputs class method)

fs_license (QSIPrepDefaults attribute) (QSIReconDefaults attribute) fs_subjects_dir (QSIReconDefaults attribute)

G

grouping (HeudiconvDefaults attribute)

H

HeudiconvDefaults (class in voxelops.schemas.heudiconv) HeudiconvInputs (class in voxelops.schemas.heudiconv) HeudiconvOutputs (class in voxelops.schemas.heudiconv)

heuristic (HeudiconvDefaults attribute) (HeudiconvInputs attribute) html_report (QSIPrepOutputs attribute) (QSIReconOutputs attribute)

I

InputValidationError

L

log_level (QSIParcDefaults attribute)

longitudinal (QSIPrepDefaults attribute)

M

mask (QSIParcDefaults attribute) mem_mb (QSIPrepDefaults attribute) (QSIReconDefaults attribute) module voxelops voxelops.exceptions voxelops.runners voxelops.runners._base voxelops.runners.heudiconv voxelops.runners.qsiparc voxelops.runners.qsiprep voxelops.runners.qsirecon voxelops.schemas voxelops.schemas.heudiconv voxelops.schemas.qsiparc voxelops.schemas.qsiprep voxelops.schemas.qsirecon voxelops.utils voxelops.utils.bids

N

n_jobs (QSIParcDefaults attribute) (QSIParcInputs attribute) n_procs (QSIParcDefaults attribute) (QSIParcInputs attribute)

nprocs (QSIPrepDefaults attribute) (QSIReconDefaults attribute)

O

output_dir (HeudiconvInputs attribute) (QSIParcInputs attribute) (QSIParcOutputs attribute) (QSIPrepInputs attribute) (QSIReconInputs attribute)

output_resolution (QSIPrepDefaults attribute) OutputCollectionError overwrite (HeudiconvDefaults attribute)

P

participant (HeudiconvInputs attribute) (QSIParcInputs attribute) (QSIPrepInputs attribute) (QSIReconInputs attribute) participant_dir (HeudiconvOutputs attribute) (QSIPrepOutputs attribute) (QSIReconOutputs attribute)

post_process (HeudiconvDefaults attribute) post_process_dry_run (HeudiconvDefaults attribute) post_process_heudiconv_output() (in module voxelops.utils.bids) ProcedureConfigurationError ProcedureError (in module voxelops.exceptions) ProcedureExecutionError

Q

QSIParcDefaults (class in voxelops.schemas.qsiparc) QSIParcInputs (class in voxelops.schemas.qsiparc) QSIParcOutputs (class in voxelops.schemas.qsiparc) qsiprep_dir (QSIPrepOutputs attribute) (QSIReconInputs attribute) QSIPrepDefaults (class in voxelops.schemas.qsiprep)

QSIPrepInputs (class in voxelops.schemas.qsiprep) QSIPrepOutputs (class in voxelops.schemas.qsiprep) qsirecon_dir (QSIParcInputs attribute) (QSIReconOutputs attribute) QSIReconDefaults (class in voxelops.schemas.qsirecon) QSIReconInputs (class in voxelops.schemas.qsirecon) QSIReconOutputs (class in voxelops.schemas.qsirecon)

R

recon_spec (QSIReconInputs attribute) remove_bval_bvec_from_fmaps() (in module voxelops.utils.bids) resampling_target (QSIParcDefaults attribute) run_docker() (in module voxelops.runners._base)

run_heudiconv() (in module voxelops.runners.heudiconv) run_qsiparc() (in module voxelops.runners.qsiparc) run_qsiprep() (in module voxelops.runners.qsiprep) run_qsirecon() (in module voxelops.runners.qsirecon)

S

session (HeudiconvInputs attribute) (QSIParcInputs attribute)

skip_bids_validation (QSIPrepDefaults attribute) subject_anatomical_reference (QSIPrepDefaults attribute)

V

validate_input_dir() (in module voxelops.runners._base) validate_participant() (in module voxelops.runners._base) verify_fmap_epi_files() (in module voxelops.utils.bids) voxelops module voxelops.exceptions module voxelops.runners module voxelops.runners._base module voxelops.runners.heudiconv module voxelops.runners.qsiparc module voxelops.runners.qsiprep module

voxelops.runners.qsirecon module voxelops.schemas module voxelops.schemas.heudiconv module voxelops.schemas.qsiparc module voxelops.schemas.qsiprep module voxelops.schemas.qsirecon module voxelops.utils module voxelops.utils.bids module

W

work_dir (QSIPrepInputs attribute) (QSIPrepOutputs attribute) (QSIReconInputs attribute) (QSIReconOutputs attribute)

Y

YALabProcedureError