layered_config_tree>=2.1.0
numpy<2.0.0
pandas
pyyaml>=5.1
scipy
click
tables
networkx
loguru
pyarrow
dill
pandas-stubs
networkx-stubs
types-PyYAML

[dev]
sphinx<8.0.0,>=4.0
sphinx-rtd-theme>=0.6
sphinx-click
IPython
matplotlib
sphinxcontrib-video
sphinx-autodoc-typehints
pytest
pytest-cov
pytest-mock
vivarium_testing_utils
black==22.3.0
isort
mypy
ipywidgets
jupyter

[docs]
sphinx<8.0.0,>=4.0
sphinx-rtd-theme>=0.6
sphinx-click
IPython
matplotlib
sphinxcontrib-video
sphinx-autodoc-typehints

[interactive]
IPython
ipywidgets
jupyter

[test]
pytest
pytest-cov
pytest-mock
vivarium_testing_utils
