.gitignore
.readthedocs.yml
.travis.yml
LICENSE
README.rst
setup.py
data/cells.cellSNP.vcf.gz
data/donors.cellSNP.vcf.gz
data/donors.two.cellSNP.vcf.gz
data/cellSNP_mat/cellSNP.base.vcf.gz
data/cellSNP_mat/cellSNP.samples.tsv
data/cellSNP_mat/cellSNP.tag.AD.mtx
data/cellSNP_mat/cellSNP.tag.DP.mtx
data/cellSNP_mat/cellSNP.tag.OTH.mtx
data/mitoDNA/cellSNP.tag.AD.mtx
data/mitoDNA/cellSNP.tag.DP.mtx
doc/API.rst
doc/Makefile
doc/conf.py
doc/genotype.rst
doc/index.rst
doc/install.rst
doc/manual.rst
doc/release.rst
doc/requirements.txt
doc/supp_methods_corrected.pdf
doc/image/GT_barcodes.png
examples/demo.sh
examples/donor_match.ipynb
examples/vireoSNP_clones.ipynb
examples/vireoSNP_donors.ipynb
simulate/README.rst
simulate/synth_pool.py
vireoSNP/GTbarcode.py
vireoSNP/__init__.py
vireoSNP/version.py
vireoSNP/vireo.py
vireoSNP.egg-info/PKG-INFO
vireoSNP.egg-info/SOURCES.txt
vireoSNP.egg-info/dependency_links.txt
vireoSNP.egg-info/entry_points.txt
vireoSNP.egg-info/requires.txt
vireoSNP.egg-info/top_level.txt
vireoSNP/plot/__init__.py
vireoSNP/plot/base_plot.py
vireoSNP/utils/__init__.py
vireoSNP/utils/base_utils.py
vireoSNP/utils/bmm_model.py
vireoSNP/utils/io_utils.py
vireoSNP/utils/variant_select.py
vireoSNP/utils/vcf_utils.py
vireoSNP/utils/vireo_base.py
vireoSNP/utils/vireo_bulk.py
vireoSNP/utils/vireo_doublet.py
vireoSNP/utils/vireo_model.py
vireoSNP/utils/vireo_wrap.py