.gitignore
.travis.yml
LICENSE
README.md
enviroment-cuda.yml
environment_cpu.yml
setup.py
.github/workflows/main.yml
docs/Makefile
docs/make.bat
docs/source/api.rst
docs/source/conf.py
docs/source/index.rst
docs/source/installation.md
docs/source/requirements.txt
docs/source/tutorials/R_analyses.md
docs/source/tutorials/atac_tutorial.ipynb
docs/source/tutorials/index.rst
docs/source/tutorials/mixed_cell_lines_tutorial.ipynb
tests/vipcca_test.py
vipcca/__init__.py
vipcca/vipcca.py
vipcca.egg-info/PKG-INFO
vipcca.egg-info/SOURCES.txt
vipcca.egg-info/dependency_links.txt
vipcca.egg-info/not-zip-safe
vipcca.egg-info/requires.txt
vipcca.egg-info/top_level.txt
vipcca/network/__init__.py
vipcca/network/network.py
vipcca/network/transferLabel.py
vipcca/plotting/__init__.py
vipcca/plotting/plotting.py
vipcca/preprocessing/__init__.py
vipcca/preprocessing/parser.py
vipcca/preprocessing/preprocessing.py
vipcca/preprocessing/qqnorm.py