# Vigil Genomics Capsule - Python Dependencies

# Core data analysis
pandas>=2.2.0
numpy>=1.26.0
pyarrow>=15.0.0  # Parquet support

# Genomics libraries
pysam>=0.22.0     # SAM/BAM/CRAM/VCF manipulation
cyvcf2>=0.30.0    # Fast VCF parsing
biopython>=1.83   # Sequence analysis

# Workflow management
snakemake>=8.4.0
pyyaml>=6.0.0

# Statistics and machine learning
scipy>=1.12.0
scikit-learn>=1.4.0

# Visualization (optional, for notebooks)
matplotlib>=3.8.0
seaborn>=0.13.0

# Utilities
tqdm>=4.66.0      # Progress bars
requests>=2.31.0  # HTTP requests
