Metadata-Version: 1.0
Name: vificov
Version: 1.0.5
Summary: Visual Field Coverage (ViFiCov) visualization in python.
Home-page: https://github.com/MSchnei/vificov
Author: Marian Schneider
Author-email: marian.schneider@maastrichtuniversity.nl
License: GNU General Public License Version 3
Description: **Vi** sual **Fi** eld **Cov** erage (ViFiCov) visualization in python.
        
        This package takes as input parameters that describe a 2D Gaussian model
        for a set of voxels and returns projections of the voxels’ visual field
        coverage.
        
        Installation
        ------------
        
        For installation, follow these steps:
        
        Option A: install via pip
        ~~~~~~~~~~~~~~~~~~~~~~~~~
        
        .. code:: bash
        
           pip install vificov
        
        Option B: install from github repository
        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
        
        0. (Optional) Create conda environment
        
        .. code:: bash
        
           conda create -n env_vificov python=3.6
           source activate env_vificov
           conda install pip
        
        1. Clone repository
        
        .. code:: bash
        
           git clone https://github.com/MSchnei/vificov.git
        
        2. Install vificov with pip
        
        .. code:: bash
        
           pip install /path/to/cloned/vificov
        
        How to use
        ----------
        
        1. Adjust the csv file
        ~~~~~~~~~~~~~~~~~~~~~~
        
        Adjust the information in the config_default.csv file, such that the
        provided information is correct. It is recommended to make a specific
        copy of the csv file for every subject and project.
        
        2. Run pyprf_motion
        ~~~~~~~~~~~~~~~~~~~
        
        Open a terminal and run
        
        ::
        
           vificov -config path/to/custom_config.csv
        
        References
        ----------
        
        This application is based on the following work:
        
        -  Le, R., Witthoft, N., Ben-Shachar, M., & Wandell, B. (2016). The
           field of view available to the cortical reading circuitry. BioRxiv,
           17, 1–19. https://doi.org/https://doi.org/10.1101/069369
        -  Kok, P., Bains, L. J., Van Mourik, T., Norris, D. G., & De Lange, F.
           P. (2016). Selective activation of the deep layers of the human
           primary visual cortex by top-down feedback. Current Biology, 26(3),
           371–376. https://doi.org/10.1016/j.cub.2015.12.038
        
        License
        -------
        
        The project is licensed under `GNU General Public License Version
        3 <http://www.gnu.org/licenses/gpl.html>`__.
        
Keywords: pRF,fMRI,retinotopy
Platform: UNKNOWN
