LICENSE
README.md
pyproject.toml
tests/test_installation.py
vicon/__init__.py
vicon/run_pipeline.py
vicon.egg-info/PKG-INFO
vicon.egg-info/SOURCES.txt
vicon.egg-info/dependency_links.txt
vicon.egg-info/entry_points.txt
vicon.egg-info/requires.txt
vicon.egg-info/top_level.txt
vicon/alignment/__init__.py
vicon/alignment/ref_align.py
vicon/dereplication/__init__.py
vicon/dereplication/derep.py
vicon/io/__init__.py
vicon/io/fasta.py
vicon/io/wig.py
vicon/processing/__init__.py
vicon/processing/coverage_analysis.py
vicon/processing/kmer_analysis.py
vicon/processing/sample_processing.py
vicon/processing/sliding_window.py
vicon/scripts/ViralMSA.py
vicon/utils/__init__.py
vicon/utils/helpers.py
vicon/utils/year_extraction.py
vicon/visualization/__init__.py
vicon/visualization/plots.py