numpy
scipy
biopython
cvxpy
cython
dill
duckdb
gcsfs
pyarrow
ipdb
ipython
line-profiler
altair
numba
orjson
ortools<9.11
pandas
polars
pymunk
scikit-image
scikit-learn
seaborn
swiglpk
sympy
tqdm
unum
vivarium-core
imageio[ffmpeg]
statsmodels
ecos
matplotlib
iteround
stochastic-arrow
autograd
xmltodict
vl-convert-python

[dev]
pytest
pytest-cov
mypy
ruff
pre-commit
jupyter
marimo[lsp,sql]

[docs]
Sphinx
sphinx-rtd-theme
nbsphinx
