LICENSE
MANIFEST.in
README.md
requirements.txt
setup.py
vdw/__init__.py
vdw/models.py
vdw/signals.py
vdw.egg-info/PKG-INFO
vdw.egg-info/SOURCES.txt
vdw.egg-info/dependency_links.txt
vdw.egg-info/requires.txt
vdw.egg-info/top_level.txt
vdw/assessments/__init__.py
vdw/assessments/models.py
vdw/assessments/fixtures/assessment_categories.json
vdw/assessments/fixtures/parental_results.json
vdw/assessments/fixtures/pathogenicities.json
vdw/assessments/migrations/0001_initial.py
vdw/assessments/migrations/0002_auto__chg_field_assessment_category.py
vdw/assessments/migrations/0003_auto__add_field_assessment_notes__add_field_assessment_created__add_fi.py
vdw/assessments/migrations/0004_auto__add_assessmentcategory__add_field_assessment_assessment_category.py
vdw/assessments/migrations/0005_copy_categories.py
vdw/assessments/migrations/0006_auto__del_category__del_field_assessment_category.py
vdw/assessments/migrations/0007_auto__add_unique_assessment_user_sample_result.py
vdw/assessments/migrations/0008_load_pathogenicities.py
vdw/assessments/migrations/0009_load_assessment_categories.py
vdw/assessments/migrations/0010_load_parental_results.py
vdw/assessments/migrations/0011_add_other_assessment_category.py
vdw/assessments/migrations/0012_add_default_categories_to_existing_assessments.py
vdw/assessments/migrations/0013_auto__chg_field_assessment_assessment_category.py
vdw/assessments/migrations/__init__.py
vdw/conf/__init__.py
vdw/conf/global_settings.py
vdw/conf/local_settings.py
vdw/conf/settings.py
vdw/core/__init__.py
vdw/core/models.py
vdw/db/__init__.py
vdw/db/utils.py
vdw/genes/__init__.py
vdw/genes/managers.py
vdw/genes/models.py
vdw/genes/management/__init__.py
vdw/genes/management/commands/__init__.py
vdw/genes/management/commands/genes.py
vdw/genes/management/subcommands/__init__.py
vdw/genes/management/subcommands/load.py
vdw/genes/migrations/0001_initial.py
vdw/genes/migrations/0002_auto__add_field_geneset_published.py
vdw/genes/migrations/0003_auto.py
vdw/genes/migrations/0004_auto__chg_field_geneset_created__chg_field_geneset_modified.py
vdw/genes/migrations/0005_drop_legacy_gene_phenotype_unique_constraint.py
vdw/genes/migrations/0006_auto__del_field_geneset_description__del_field_geneset_context.py
vdw/genes/migrations/__init__.py
vdw/genome/__init__.py
vdw/genome/models.py
vdw/genome/fixtures/initial_data.json
vdw/genome/migrations/0001_initial.py
vdw/genome/migrations/0002_auto__del_genome.py
vdw/genome/migrations/__init__.py
vdw/literature/__init__.py
vdw/literature/models.py
vdw/literature/migrations/0001_initial.py
vdw/literature/migrations/__init__.py
vdw/management/__init__.py
vdw/management/commands/__init__.py
vdw/management/commands/sqldatasize.py
vdw/management/commands/sqldropindexes.py
vdw/management/commands/subcommander.py
vdw/phenotypes/__init__.py
vdw/phenotypes/models.py
vdw/phenotypes/management/__init__.py
vdw/phenotypes/management/commands/__init__.py
vdw/phenotypes/management/commands/phenotypes.py
vdw/phenotypes/management/subcommands/__init__.py
vdw/phenotypes/management/subcommands/load.py
vdw/phenotypes/migrations/0001_initial.py
vdw/phenotypes/migrations/0002_rename_phenotype_datafield.py
vdw/phenotypes/migrations/__init__.py
vdw/pipeline/__init__.py
vdw/pipeline/checks.py
vdw/pipeline/load.py
vdw/pipeline/models.py
vdw/pipeline/utils.py
vdw/raw/__init__.py
vdw/raw/models.py
vdw/raw/evs/__init__.py
vdw/raw/evs/models.py
vdw/raw/evs/management/__init__.py
vdw/raw/evs/management/subcommands/__init__.py
vdw/raw/evs/management/subcommands/load.py
vdw/raw/hgnc/__init__.py
vdw/raw/hgnc/models.py
vdw/raw/hgnc/management/__init__.py
vdw/raw/hgnc/management/subcommands/__init__.py
vdw/raw/hgnc/management/subcommands/load.py
vdw/raw/hpo/__init__.py
vdw/raw/hpo/management/__init__.py
vdw/raw/hpo/management/subcommands/__init__.py
vdw/raw/hpo/management/subcommands/load.py
vdw/raw/management/__init__.py
vdw/raw/management/commands/__init__.py
vdw/raw/management/commands/raw.py
vdw/raw/management/subcommands/__init__.py
vdw/raw/management/subcommands/load.py
vdw/raw/polyphen2/__init__.py
vdw/raw/polyphen2/models.py
vdw/raw/polyphen2/management/__init__.py
vdw/raw/polyphen2/management/subcommands/__init__.py
vdw/raw/polyphen2/management/subcommands/load.py
vdw/raw/sift/__init__.py
vdw/raw/sift/models.py
vdw/raw/sift/management/__init__.py
vdw/raw/sift/management/subcommands/__init__.py
vdw/raw/sift/management/subcommands/load.py
vdw/raw/sources/__init__.py
vdw/raw/sources/models.py
vdw/raw/thousandg/__init__.py
vdw/raw/thousandg/models.py
vdw/raw/thousandg/management/__init__.py
vdw/raw/thousandg/management/subcommands/__init__.py
vdw/raw/thousandg/management/subcommands/load.py
vdw/raw/ucsc/__init__.py
vdw/raw/ucsc/models.py
vdw/raw/ucsc/management/__init__.py
vdw/raw/ucsc/management/subcommands/__init__.py
vdw/raw/ucsc/management/subcommands/load.py
vdw/raw/utils/__init__.py
vdw/raw/utils/stream.py
vdw/samples/__init__.py
vdw/samples/models.py
vdw/samples/receivers.py
vdw/samples/utils.py
vdw/samples/management/__init__.py
vdw/samples/management/commands/__init__.py
vdw/samples/management/commands/samples.py
vdw/samples/management/subcommands/__init__.py
vdw/samples/management/subcommands/allele_freqs.py
vdw/samples/management/subcommands/delete_project.py
vdw/samples/management/subcommands/delete_sample.py
vdw/samples/management/subcommands/gene_ranks.py
vdw/samples/management/subcommands/prioritize.py
vdw/samples/management/subcommands/queue.py
vdw/samples/migrations/0001_initial.py
vdw/samples/migrations/0002_auto__add_field_cohort_label__chg_field_cohort_name__add_unique_cohort.py
vdw/samples/migrations/0003_remap_names_and_labels.py
vdw/samples/migrations/0004_auto__chg_field_cohort_name__chg_field_cohort_label__chg_field_project.py
vdw/samples/migrations/0005_auto__chg_field_result_sample__chg_field_result_variant__add_unique_re.py
vdw/samples/migrations/0006_auto__del_cohort__del_unique_cohort_project_name__del_cohortvariant__d.py
vdw/samples/migrations/0007_auto__add_cohort__add_cohortsample__add_unique_cohortsample_object_set.py
vdw/samples/migrations/0008_force_migrate_default_cohort_and_project.py
vdw/samples/migrations/0009_auto__add_field_sample_project.py
vdw/samples/migrations/0010_add_project_reference_to_sample.py
vdw/samples/migrations/0011_change_datafield_app_name_projectcohort_to_batch.py
vdw/samples/migrations/0012_populate_autocreated_cohorts_with_samples.py
vdw/samples/migrations/0013_sync_batch_metadata.py
vdw/samples/migrations/0014_update_cohort_allele_frequencies.py
vdw/samples/migrations/0015_publish_autocreated_non_batch_cohorts.py
vdw/samples/migrations/0016_auto__add_field_cohort_order.py
vdw/samples/migrations/0017_add_order_to_autocreated_cohorts.py
vdw/samples/migrations/0018_create_project_groups.py
vdw/samples/migrations/0019_auto__add_field_result_base_counts.py
vdw/samples/migrations/0020_auto__add_field_result_raw_read_depth.py
vdw/samples/migrations/0021_auto__del_unique_sample_batch_name__add_unique_sample_version_batch_na.py
vdw/samples/migrations/0022_auto__add_field_cohort_batch.py
vdw/samples/migrations/0023_rebuild_autocreated_cohorts.py
vdw/samples/migrations/0024_auto__add_field_cohort_allele_freq_modified.py
vdw/samples/migrations/0025_auto__chg_field_cohort_created__chg_field_cohort_modified.py
vdw/samples/migrations/0026_delete_autocreated_batch_cohorts.py
vdw/samples/migrations/0028_auto__add_samplemanifest.py
vdw/samples/migrations/0029_auto__add_field_sample_vcf_colname.py
vdw/samples/migrations/0030_auto__del_unique_samplemanifest_path.py
vdw/samples/migrations/0031_auto__del_field_cohort_description__del_field_cohort_context__del_uniq.py
vdw/samples/migrations/0032_auto__add_resultscore.py
vdw/samples/migrations/0033_auto__add_field_sample_phenotype_modified.py
vdw/samples/migrations/0034_auto__chg_field_cohortvariant_id__chg_field_result_id.py
vdw/samples/migrations/0035_auto__add_resultset__add_unique_resultset_sample_name__add_resultsetit.py
vdw/samples/migrations/0036_in_dbsnp_nulls_to_false.py
vdw/samples/migrations/0037_auto__chg_field_result_in_dbsnp__add_index_result_in_dbsnp.py
vdw/samples/migrations/0038_auto__del_samplerun.py
vdw/samples/migrations/__init__.py
vdw/samples/pipeline/__init__.py
vdw/samples/pipeline/handlers.py
vdw/samples/pipeline/utils.py
vdw/variants/__init__.py
vdw/variants/managers.py
vdw/variants/models.py
vdw/variants/scores.py
vdw/variants/utils.py
vdw/variants/fixtures/initial_data.json
vdw/variants/management/__init__.py
vdw/variants/management/commands/__init__.py
vdw/variants/management/commands/variants.py
vdw/variants/management/subcommands/__init__.py
vdw/variants/management/subcommands/load.py
vdw/variants/management/subcommands/reload_snpeff.py
vdw/variants/migrations/0001_initial.py
vdw/variants/migrations/0002_auto__del_field_evs_clinical_info__add_field_evs_read_depth__add_field.py
vdw/variants/migrations/0003_auto__add_field_evs_gts__add_field_evs_ea_gtc__add_field_evs_aa_gtc__a.py
vdw/variants/migrations/0004_auto__chg_field_evs_aa_ac_alt__chg_field_evs_ea_ac_alt__chg_field_evs_.py
vdw/variants/migrations/0005_add_variantphenotype_hgmd_id.py
vdw/variants/migrations/0006_metadata_migration_allow_nulls_translator.py
vdw/variants/migrations/0007_migrate_snps_only_to_allow_nulls_translator.py
vdw/variants/migrations/0008_evs_rename_maf_to_af.py
vdw/variants/migrations/0009_rename_evs_maf_datafields.py
vdw/variants/migrations/0010_auto.py
vdw/variants/migrations/0011_auto__add_field_varianteffect_hgvs_c__add_field_varianteffect_hgvs_p.py
vdw/variants/migrations/0012_auto__add_field_varianteffect_segment.py
vdw/variants/migrations/0013_auto__add_unique_evs_variant__add_unique_thousandg_variant.py
vdw/variants/migrations/__init__.py
vdw/variants/pipeline/__init__.py
vdw/variants/pipeline/handlers.py
vdw/variants/pipeline/utils.py