README.rst
setup.py
test/test_allele_support.py
test/test_read_evidence.py
test/test_reads.py
test/test_variants.py
varlens/__init__.py
varlens/loci_util.py
varlens/locus.py
varlens/mhc_binding.py
varlens/read_source.py
varlens/reads_util.py
varlens/sequence_context.py
varlens/support.py
varlens/util.py
varlens/variant_includes.py
varlens/variants_util.py
varlens.egg-info/PKG-INFO
varlens.egg-info/SOURCES.txt
varlens.egg-info/dependency_links.txt
varlens.egg-info/entry_points.txt
varlens.egg-info/requires.txt
varlens.egg-info/top_level.txt
varlens/commands/__init__.py
varlens/commands/allele_support.py
varlens/commands/reads.py
varlens/commands/util.py
varlens/commands/variants.py
varlens/read_evidence/__init__.py
varlens/read_evidence/pileup.py
varlens/read_evidence/pileup_collection.py
varlens/read_evidence/pileup_element.py
varlens/read_evidence/util.py