from .alphafold3 import (
    AF3MSAInput,
    AF3MergedInput,
    AF3MSAOutput,
    AF3InferenceOutput
)
from .shared import(
    ProteinSequence,
    CIF,
    PDB,
    PDBQT,
    PSF,
    NAMDSimulationDir,
    NAMDCheckpoint,
    SLURMPending,
    Trajectory,
    ConformationSet,
    PocketCenter,
    PocketSet,
    Ligand,
    DeepSurfPocketResult,
    LigandPrepInput,
    DockingInput,
    DockingResult,
    ComplexPredictionInput,
)


__all__ = [
    "AF3MSAInput",
    "AF3MergedInput",
    "AF3MSAOutput",
    "AF3InferenceOutput",
    "ProteinSequence",
    "CIF",
    "PDB",
    "PDBQT",
    "PSF",
    "NAMDSimulationDir",
    "NAMDCheckpoint",
    "SLURMPending",
    "Trajectory",
    "ConformationSet",
    "PocketCenter",
    "PocketSet",
    "Ligand",
    "DeepSurfPocketResult",
    "LigandPrepInput",
    "DockingInput",
    "DockingResult",
    "ComplexPredictionInput",
]