from varidock.pipeline.pipeline import Pipeline
from varidock.pipeline.stage import Stage
from varidock.pipeline.types import (
    ProteinSequence,
    PDB,
    PDBQT,
    PSF,
    NAMDSimulationDir,
    Trajectory,
    ConformationSet,
    PocketCenter,
    PocketSet,
    Ligand,
    LigandPrepInput,
    DockingInput,
    DockingResult,
)

__all__ = [
    "Pipeline",
    "Stage",
    "ProteinSequence",
    "PDB",
    "PDBQT",
    "PSF",
    "NAMDSimulationDir",
    "Trajectory",
    "ConformationSet",
    "PocketCenter",
    "PocketSet",
    "Ligand",
    "LigandPrepInput",
    "DockingInput",
    "DockingResult",
]
