LICENSE
README.md
pyproject.toml
setup.py
varidock/__init__.py
varidock/cli.py
varidock/config.py
varidock/plans.py
varidock.egg-info/PKG-INFO
varidock.egg-info/SOURCES.txt
varidock.egg-info/dependency_links.txt
varidock.egg-info/entry_points.txt
varidock.egg-info/requires.txt
varidock.egg-info/top_level.txt
varidock/broker/__init__.py
varidock/broker/adfr/__init__.py
varidock/broker/adfr/prepare_receptor.py
varidock/broker/deepsurf/__init__.py
varidock/broker/deepsurf/bsite_extraction.py
varidock/broker/deepsurf/features.py
varidock/broker/deepsurf/network.py
varidock/broker/deepsurf/old.predict.py
varidock/broker/deepsurf/predict.py
varidock/broker/deepsurf/protein.py
varidock/broker/deepsurf/tfbio_data.py
varidock/broker/deepsurf/utils.py
varidock/broker/deepsurf/net/__init__.py
varidock/broker/deepsurf/net/resnet_3d.py
varidock/broker/deepsurf/net/resnet_3d_utils.py
varidock/broker/deepsurf/net/resnet_lds_3d_bottleneck.py
varidock/broker/meeko/__init__.py
varidock/broker/meeko/meeko.py
varidock/broker/vina/__init__.py
varidock/broker/vina/vina.py
varidock/execution/__init__.py
varidock/execution/local.py
varidock/execution/materialize.py
varidock/execution/run.py
varidock/execution/slurm.py
varidock/execution/utils.py
varidock/execution/validate.py
varidock/io/__init__.py
varidock/io/af3_json.py
varidock/io/af3_load.py
varidock/io/boltz_yaml.py
varidock/io/fasta.py
varidock/jobs/__init__.py
varidock/jobs/jobs.py
varidock/pipeline/__init__.py
varidock/pipeline/pipeline.py
varidock/pipeline/stage.py
varidock/pipeline/types.py
varidock/runners/__init__.py
varidock/runners/af3.py
varidock/runners/base.py
varidock/runners/boltz.py
varidock/stages/__init__.py
varidock/stages/adfr_protein_receptor_prep.py
varidock/stages/af3_single_protein_predictor.py
varidock/stages/center_ligand_to_pocket.py
varidock/stages/cif_to_pdb.py
varidock/stages/deepsurf_pockets.py
varidock/stages/insert_plddt_to_pdb.py
varidock/stages/meeko_ligand_prep.py
varidock/stages/namd_eq.py
varidock/stages/namd_eq2.py
varidock/stages/namd_prod.py
varidock/stages/vina_dock.py
varidock/stages/vmd_equil_prep.py
varidock/stages/vmd_frame_extract.py
varidock/structure/__init__.py
varidock/structure/base.py
varidock/structure/msa.py
varidock/structure/template.py