.hgignore
.hgtags
LICENSE.txt
Makefile
README.rst
TODO
ez_setup.py
setup.cfg
setup.py
sphinx_pypi_upload.py
bin/fetch-tx-ensembl
bin/fetch-tx-ucsc
bin/fetch-tx-uta
bin/uta
bin/uta-align-exons
bin/uta-build-refagree
bin/uta-enst-nm-equiv
bin/uta-load-ncbi
bin/uta-load-ncbi-gene-records
bin/uta-load-ncbi-refseq-records
bin/uta-tx-table
bin/uta-update-alignments
bin/uta-webservice
doc/Makefile
doc/command notes
doc/design
doc/ensembl-rest
doc/goals
doc/source/conf.py
doc/source/database.rst
doc/source/db_loading.rst
doc/source/db_schema.rst
doc/source/description.rst
doc/source/examples.rst
doc/source/getting_started.rst
doc/source/index.rst
doc/source/installation.rst
doc/source/modules.rst
doc/source/modules_ud_transcriptdb.rst
doc/source/overview.rst
doc/static/favicon.ico
doc/static/uta-logo.png
doc/themes/invitae/instlogo.html
doc/themes/invitae/layout.html
doc/themes/invitae/theme.conf
doc/themes/invitae/static/dialog-note.png
doc/themes/invitae/static/dialog-seealso.png
doc/themes/invitae/static/dialog-todo.png
doc/themes/invitae/static/dialog-topic.png
doc/themes/invitae/static/dialog-warning.png
doc/themes/invitae/static/epub.css
doc/themes/invitae/static/footerbg.png
doc/themes/invitae/static/headerbg.png
doc/themes/invitae/static/ie6.css
doc/themes/invitae/static/invitae.css_t
doc/themes/invitae/static/invitae.png
doc/themes/invitae/static/middlebg.png
doc/themes/invitae/static/transparent.gif
etc/logging.conf
etc/pylintrc
etc/uta.conf
lib/perl5/UTA/GeneTranscriptInfo.pm
lib/perl5/UTA/Matchmaker.pm
lib/python/uta/__init__.py
lib/python/uta/cli.py
lib/python/uta/exceptions.py
lib/python/uta/luts.py
lib/python/uta/version.py
lib/python/uta.egg-info/PKG-INFO
lib/python/uta.egg-info/SOURCES.txt
lib/python/uta.egg-info/dependency_links.txt
lib/python/uta.egg-info/not-zip-safe
lib/python/uta.egg-info/requires.txt
lib/python/uta.egg-info/top_level.txt
lib/python/uta/db/__init__.py
lib/python/uta/db/loading.py
lib/python/uta/db/models.py
lib/python/uta/db/sa_models.py
lib/python/uta/db/transcriptdb.py
lib/python/uta/parsers/__init__.py
lib/python/uta/parsers/geneinfo.py
lib/python/uta/parsers/seqgene.py
lib/python/uta/tools/__init__.py
lib/python/uta/utils/__init__.py
lib/python/uta/utils/coords.py
lib/python/uta/utils/genomeutils.py
lib/python/uta/utils/hgid.py
lib/sql/db.sql
lib/sql/dbviews.sql
lib/sql/gene_summary_v.sql
loading/Makefile
misc/garcia-setup.py
misc/uta-logo-128.png
misc/uta-logo.odg
misc/uta-logo.png
misc/exon-str-cmp/Makefile
sbin/conf-to-vars
sbin/dbsnp-rs-summary-to-tsv
sbin/extract-makefile-documentation
sbin/fasta-hash-to-tsv
sbin/perl-module-install
sbin/uta-pg-to-sqlite
sbin/uta-shell
tests/NOtest_uta_db_sa_models.py
tests/test_uta_db_transcriptdb.py
tests/test_uta_parsers_geneinfo.py
tests/test_uta_parsers_seqgene.py
tests/data/DNAH11-HGMD.tsv
tests/data/DNAH11-dbSNP.tsv
tests/data/NEFL-dbSNP.tsv
tests/data/garcia.tsv
tests/data/gene_info_100human.gz
tests/data/seq_gene10k.md.gz
tests/data/seq_gene_100.md.gz
tests/data/test.conf
web/uta_webservice.py
web/static/bootstrap/css/bootstrap-responsive.css
web/static/bootstrap/css/bootstrap-responsive.min.css
web/static/bootstrap/css/bootstrap.css
web/static/bootstrap/css/bootstrap.min.css
web/static/bootstrap/img/glyphicons-halflings-white.png
web/static/bootstrap/img/glyphicons-halflings.png
web/static/bootstrap/js/bootstrap.js
web/static/bootstrap/js/bootstrap.min.js
web/templates/index.html