Metadata-Version: 1.1
Name: uhammer
Version: 0.3.2
Summary: Convenience layer for emcee sampler
Home-page: UNKNOWN
Author: Uwe Schmitt
Author-email: uwe.schmitt@id.ethz.ch
License: MIT license
Description: =========
        uhammer
        =========
        
        Convenience layer on top of emcee package.
        
        
        Credits
        -------
        
        This package was created with Cookiecutter_ and the `uweschmitt/cookiecutter-pypackage`_ project template.
        
        .. _Cookiecutter: https://github.com/audreyr/cookiecutter
        .. _`uweschmitt/cookiecutter-pypackage`: https://github.com/uweschmitt/cookiecutter-pypackage
        
        
        =======
        History
        =======
        
        0.3.2 (2019-05-24)
        -------------------
        - Less chatty and simpler progress report on euler. The existing progressbar
          cluttered the lsf output files. Now we report in min time intervals of 
          at least 30 seconds.
        
        
        0.3.1 (2019-05-22)
        -------------------
        - removed `mpipool` from installation dependencies, else installation always needs
          a working MPI setup. Still `mpirpool` is needed when run in parallel MPI mode.
        
        0.3.0 (2019-05-22)
        -------------------
        - sample functions now return two arrays: the samples and the related log probabilities
        - `Parameters.add` now has an optional argument for providing a starting value.
        - `load_samples` function allows extracting samples from a persisted sampler file.
        - Replaced `capture_output` argument of `sample` and `continue_sampling` by two
          arguments `show_output` and `output_prefix`.
        - Fixed bug in output recording in `continue_sampling` function.
        - Use `mpipool` librariy now + added test for `mpi` based parallel sampling.
        
        0.2.13 (2019-05-15)
        -------------------
        - fix persisting pickler error in parallel mode
        
        0.2.12 (2019-05-02)
        -------------------
        - minor tweaks for mpi
        - fix for emcee 3 dev version
        
        0.2.11 (2019-04-30)
        -------------------
        - shutdown mpi pool in case a worker throws an exception, before
          this fix mpirun would hang.
        - fix handling of capture output file names when running with mpi
        
        0.2.10 (2019-04-19)
        -------------------
        - fix race condition when removing marker file
        - deactivate unnecessary warnings about missing mpi4py
        
        
        0.2.9 (2019-04-16)
        ------------------
        * Don't show progressbar when run on euler node
        * Works with Python 3.7
        
        0.2.8 (2019-04-12)
        ------------------
        * Fix to work with dev version of emcee 3
        
        0.2.7 (2019-03-20)
        ------------------
        * Fix issue with capuring output in parallel mode
        * Stop progress bar in case of unhandled exception
        
        
        0.2.6 (2019-03-20)
        ------------------
        * Fix dependencies for Python 3.7 in setup.py
        
        
        0.2.5 (2019-03-20)
        ------------------
        
        * Fix package lookup in requirements_dev.txt
        * Fix error in error handling when output redirection fails.
        
        0.2.4 (2018-10-29)
        ------------------
        
        * fix ordering of sampler output rows.
        
        0.2.3 (2018-10-24)
        ------------------
        
        * check OMP_NUM_THREADS to warn of possible  over subscription.
        * better pickling support for posterior function.
        
        0.2.2 (2018-10-11)
        ------------------
        
        * Fix detection if uhammer runs on full node on euler.
        * Dont show statusbar if direct write to fid 1 is not possible.
        * Supress some unappropriate error messages from MPI, even if
          uhammer is not run using mpirun.
        * Fix ip check to detect if uhammer runs on euler.
        
        0.2.1 (2018-09-28)
        ------------------
        
        * Fix of regression due to implementation of Python 2 support.
        
        0.2.0 (2018-09-28)
        ------------------
        
        * Introduced Python 2 support.
        
        0.1.0 (2018-08-23)
        ------------------
        
        * Initial version.
        
Platform: UNKNOWN
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 2.7
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.4
Classifier: Programming Language :: Python :: 3.5
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
