# Phase 2: Enhanced Clinical Features - Setup Status

**Date**: 3.12.3 (main, Aug 14 2025, 17:47:21) [GCC 13.3.0]
**Project Root**: /home/kevin/Projects/tumor-detection-segmentation

## ✅ Completed Setup Tasks

### 🏥 DICOM Server Integration
- [x] DICOM storage directories created
- [x] DICOM server configuration template created
- [x] pydicom and pynetdicom dependencies installed
- [x] Audit logging directory structure setup

### 🔄 HL7 FHIR Compliance  
- [x] FHIR resource directories created
- [x] FHIR server configuration template created
- [x] FHIR dependencies installed (fhir.resources)
- [x] Base FHIR R4 support configured

### 🧠 3D Slicer Plugin
- [x] Slicer plugin directory structure created
- [x] CMakeLists.txt template for extension created
- [x] Plugin foundation code implemented
- [x] Development environment prepared

### 📋 Clinical Report Generation
- [x] Report template directories created
- [x] Report generation dependencies installed
- [x] PDF/Word/HTML export capabilities
- [x] Sample brain tumor template created

### ✅ Real Clinical Data Validation
- [x] Validation framework foundation
- [x] Data pipeline structure prepared
- [x] Testing infrastructure setup

## 🚀 Next Steps

1. **DICOM Server Development**
   - Implement C-STORE reception handling
   - Add C-FIND/C-MOVE query capabilities  
   - Integrate with AI processing pipeline
   - Add security and authentication

2. **3D Slicer Plugin Development**
   - Complete UI implementation
   - Add real-time AI inference
   - Implement interactive annotation tools
   - Add multi-modal visualization

3. **FHIR Server Implementation** 
   - Set up FHIR server endpoints
   - Implement resource mapping
   - Add bulk data export
   - Ensure interoperability compliance

4. **Clinical Report Enhancement**
   - Add more report templates
   - Implement natural language generation
   - Add quantitative analysis
   - Integrate with workflow systems

5. **Clinical Data Validation**
   - Set up validation pipelines
   - Implement performance monitoring
   - Add feedback mechanisms
   - Prepare regulatory documentation

## 📚 Development Resources

- **DICOM Standard**: https://www.dicomstandard.org/
- **HL7 FHIR**: https://hl7.org/fhir/
- **3D Slicer Development**: https://slicer.readthedocs.io/
- **Phase 2 Implementation Plan**: docs/phases/PHASE_2_IMPLEMENTATION_PLAN.md

## 🛠️ Development Commands

```bash
# Start DICOM server (development)
python src/clinical/dicom_server/dicom_server.py

# Generate sample clinical report
python src/clinical/report_generation/clinical_reports.py

# Run Phase 2 tests
pytest tests/clinical/ -v

# Start FHIR server (when implemented)
python src/clinical/fhir_server/fhir_server.py
```

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**Phase 2 Status**: 🚀 **DEVELOPMENT READY** - All foundation components initialized!