attrs
codecov
coverage
flake8
six
tqdm
humanize
daiquiri
dask[array]
msprime >= 1.0.0
tskit >= 0.5.3
lmdb
pre-commit
pytest
pytest-coverage
# Only for giving nice error messages for incompatible older files
h5py
# Only needed for the Python implementation.
sortedcontainers
# Optional extras for debugging threads - these modules mainly work on linux
python-prctl; sys_platform == 'linux'
numa; sys_platform == 'linux'
# Needed for building docs.
sphinx
sphinx-argparse
sphinx_rtd_theme
setuptools>=45
setuptools_scm
# Needed for evaluation script.
matplotlib
seaborn
colorama
sgkit[vcf]
sphinx-book-theme
jupyter-book
sphinx-issues
ipywidgets
pyfaidx
