.gitignore
.travis.yml
CHANGELOG.rst
LICENSE
Makefile
README.md
README.rst
_tsinfermodule.c
convert_1kg.py
convert_hdf5.py
dev.py
evaluation.py
setup.py
visualisation.py
.circleci/config.yml
docs/Makefile
docs/api.rst
docs/cli.rst
docs/conf.py
docs/development.rst
docs/file_formats.rst
docs/index.rst
docs/inference.rst
docs/installation.rst
docs/introduction.rst
docs/simulation-example.py
docs/toy-example.py
docs/tutorial.rst
docs/_static/.README
docs/_templates/.README
lib/Makefile
lib/ancestor_builder.c
lib/ancestor_matcher.c
lib/argtable3.c
lib/argtable3.h
lib/avl.c
lib/avl.h
lib/block_allocator.c
lib/block_allocator.h
lib/err.h
lib/main.c
lib/object_heap.c
lib/object_heap.h
lib/tree_sequence_builder.c
lib/tsinfer.h
requirements/conda-minimal.txt
requirements/development.txt
requirements/readthedocs.txt
tests/test_cli.py
tests/test_evaluation.py
tests/test_formats.py
tests/test_inference.py
tests/test_low_level.py
tsinfer/__init__.py
tsinfer/__main__.py
tsinfer/_version.py
tsinfer/algorithm.py
tsinfer/cli.py
tsinfer/evaluation.py
tsinfer/exceptions.py
tsinfer/formats.py
tsinfer/inference.py
tsinfer/provenance.py
tsinfer/threads.py
tsinfer.egg-info/PKG-INFO
tsinfer.egg-info/SOURCES.txt
tsinfer.egg-info/dependency_links.txt
tsinfer.egg-info/entry_points.txt
tsinfer.egg-info/requires.txt
tsinfer.egg-info/top_level.txt