Metadata-Version: 2.1
Name: trtools
Version: 6.1.0
Summary: Toolkit for genome-wide analysis of STRs
Home-page: https://trtools.readthedocs.org
License: MIT
Author: Melissa Gymrek
Author-email: mgymrek@ucsd.edu
Requires-Python: >=3.7.1,<4.0
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Classifier: Programming Language :: Python :: 3.12
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Requires-Dist: cyvcf2 (>=0.30.27)
Requires-Dist: importlib-metadata (>=3.0.0) ; python_version < "3.8"
Requires-Dist: matplotlib (>=3.1.2)
Requires-Dist: numpy (>=1.17.3)
Requires-Dist: pandas (>=1.2.0)
Requires-Dist: pgenlib (>=0.90.1)
Requires-Dist: pyfaidx (>=0.5.6)
Requires-Dist: pysam (>=0.15.4)
Requires-Dist: scikit-learn (>=0.23.1)
Requires-Dist: scipy (>=1.3.3)
Requires-Dist: statsmodels (>=0.10.2)
Project-URL: Documentation, https://trtools.readthedocs.org
Project-URL: Repository, https://github.com/gymrek-lab/trtools
Description-Content-Type: text/x-rst

.. image:: https://github.com/codespaces/badge.svg
  :width: 160
  :target: https://codespaces.new/gymrek-lab/TRTools

.. image:: https://github.com/gymrek-lab/trtools/workflows/Tests/badge.svg
    :target: https://github.com/gymrek-lab/trtools/workflows/Tests/badge.svg

.. image:: https://codecov.io/gh/gymrek-lab/TRTools/branch/master/graph/badge.svg
  :target: https://codecov.io/gh/gymrek-lab/TRTools


TRTools
=======

TRTools includes a variety of utilities for filtering, quality control and analysis of tandem repeats downstream of genotyping them from next-generation sequencing. It supports multiple recent genotyping tools (see below).

See full documentation and examples at https://trtools.readthedocs.io

If you use TRTools in your work, please cite: Nima Mousavi, Jonathan Margoliash, Neha Pusarla, Shubham Saini, Richard Yanicky, Melissa Gymrek. (2020) TRTools: a toolkit for genome-wide analysis of tandem repeats. Bioinformatics. (https://doi.org/10.1093/bioinformatics/btaa736)

