tqdm
click
joblib
pyyaml
natsort
ipython
numpy
scipy
pandas
anndata
seaborn
networkx
matplotlib
scikit_learn
apted
numba
pybnb
pydot
cyvcf2
biopython
python_sat

[dev]
black==20.8b1
pre-commit==2.9.3
isort>=5.7.0
pytest-cov

[docs]
nbsphinx>=0.8.1
pyenchant>=3.1.1
requests
sphinx>=3.3.0
sphinx-autodoc-annotation
sphinx-autodoc-typehints>=1.10.3
sphinx_gallery>=0.8.2
sphinx_last_updated_by_git
sphinx_rtd_theme
sphinxcontrib-bibtex>=2.1.0
sphinxcontrib-spelling
sphinx_copybutton
sphinx-click
sphinx-paramlinks
