Metadata-Version: 2.1
Name: trisicell
Version: 0.0.1
Summary: Trisicell - Scalable tumor phylogeny reconstruction and validation
Home-page: https://github.com/faridrashidi/trisicell
Author: Farid Rashidi
Author-email: farid.rsh@gmail.com
Maintainer: Farid Rashidi
Maintainer-email: farid.rsh@gmail.com
License: BSD
Download-URL: https://github.com/faridrashidi/trisicell
Project-URL: Documentation, https://trisicell.readthedocs.io/en/latest
Project-URL: Source Code, https://github.com/faridrashidi/trisicell
Keywords: tumor phylogeny,single cell,scalable,rna-seq,dna-seq
Platform: Linux
Platform: MacOSX
Classifier: License :: OSI Approved :: BSD License
Classifier: Development Status :: 5 - Production/Stable
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: Science/Research
Classifier: Natural Language :: English
Classifier: Framework :: Jupyter
Classifier: Operating System :: MacOS :: MacOS X
Classifier: Operating System :: Microsoft :: Windows
Classifier: Operating System :: POSIX :: Linux
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Topic :: Scientific/Engineering :: Visualization
Requires-Python: >=3.6
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Requires-Dist: numpy
Requires-Dist: pandas
Requires-Dist: matplotlib
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|Build Status| |Docs Status| |Code Style|


Trisicell - Scalable tumor phylogeny reconstruction and validation
==================================================================

.. image:: https://raw.githubusercontent.com/faridrashidi/trisicell/master/docs/source/_static/images/overview.png
   :alt: overview
   :align: center


Trisicell (pronounced as "tricycle") is a computational toolkit for scalable tumor phylogeny reconstruction and validation from full-length transcriptome profiling of single-cell data (e.g. Smart-seq2) as well as single cell genome or exome sequencing data. Trisicell allows identifying and validating robust portions of a tumor phylogeny, offering the ability to focus on the most important (sub)clones and the genomic alterations that seed the associated clonal expansion.



Support
-------
Feel free to submit an `issue <https://github.com/faridrashidi/trisicell/issues/new/choose>`_
or send us an `email <mailto:farid.rsh@gmail.com>`_.
Your help to improve Trisicell is highly appreciated.


.. |DOI| image:: https://img.shields.io/badge/DOI-10.1101/gr.234435.118-orange?style=flat-square
    :target: https://doi.org/10.1101/gr.234435.118
    :alt: DOI

.. |PyPI| image:: https://img.shields.io/pypi/v/black?style=flat-square
    :target: https://pypi.org/project/trisicell
    :alt: PyPI

.. |PyPIDownloads| image:: https://pepy.tech/badge/black?style=flat-square
    :target: https://pepy.tech/project/trisicell
    :alt: PyPIDownloads

.. |Build Status| image:: https://img.shields.io/github/workflow/status/faridrashidi/trisicell/CI/master?style=flat-square
    :target: https://github.com/faridrashidi/trisicell/actions?query=workflow%3ACI
    :alt: Build Status

.. |Docs Status| image:: https://readthedocs.org/projects/trisicell/badge/?version=latest&style=flat-square
    :target: https://trisicell.readthedocs.io
    :alt: Docs Status

.. |Stars| image:: https://img.shields.io/github/stars/sfu-compbio/PhISCS?logo=GitHub&color=yellow&style=flat-square
    :target: https://github.com/sfu-compbio/PhISCS
    :alt: Stars

.. |Code Style| image:: https://img.shields.io/badge/code%20style-black-000000.svg?style=flat-square
    :target: https://github.com/python/black
    :alt: Code Style


