LICENSE
MANIFEST.in
README.md
pyproject.toml
src/triplix/__init__.py
src/triplix/__main__.py
src/triplix/config.toml
src/triplix.egg-info/PKG-INFO
src/triplix.egg-info/SOURCES.txt
src/triplix.egg-info/dependency_links.txt
src/triplix.egg-info/entry_points.txt
src/triplix.egg-info/requires.txt
src/triplix.egg-info/top_level.txt
src/triplix/core/__init__.py
src/triplix/core/bam.py
src/triplix/core/cli.py
src/triplix/core/concatemers.py
src/triplix/core/configurations.py
src/triplix/core/hdf5.py
src/triplix/core/header.py
src/triplix/core/plot.py
src/triplix/core/stat.py
src/triplix/core/tri_alignments.py
src/triplix/core/triplets.py
src/triplix/core/utilities.py
src/triplix/core/tri_alignment/__init__.py
src/triplix/core/tri_alignment/extract.py
src/triplix/core/tri_alignment/index.py
src/triplix/core/tri_alignment/merge.py
src/triplix/core/tri_alignment/sort.py
src/triplix/core/triplet/__init__.py
src/triplix/core/triplet/bin.py
src/triplix/core/triplet/enrichment.py
src/triplix/core/triplet/kdtree.py
src/triplix/core/triplet/transform.py
src/triplix/factor_configs/distances.toml
src/triplix/factor_configs/pairs.toml
src/triplix/factor_configs/pairs_surround.toml
src/triplix/factor_configs/singletons.toml