LICENSE
README.md
pyproject.toml
src/treetag/__init__.py
src/treetag/_init_tree.py
src/treetag/convert.py
src/treetag/doublets.py
src/treetag/markers.py
src/treetag/plotting.py
src/treetag/scoring.py
src/treetag/tagger.py
src/treetag/utils.py
src/treetag.egg-info/PKG-INFO
src/treetag.egg-info/SOURCES.txt
src/treetag.egg-info/dependency_links.txt
src/treetag.egg-info/requires.txt
src/treetag.egg-info/top_level.txt
src/treetag/data/PBMC_markers.yaml
src/treetag/data/PBMC_tree.yaml
src/treetag/data/__init__.py
tests/test_doublets.py
tests/test_find_doublets_reproducible.py
tests/test_markers_neg_both.py
tests/test_markers_returns_genes.py
tests/test_smoke.py
tests/test_subscores_shape.py
tests/test_treetag_bad_inputs.py
tests/test_treetag_min.py
tests/test_treetag_output_contract.py
tests/test_utils_files.py