Metadata-Version: 2.1
Name: treefit
Version: 1.0.0
Summary: The first software for quantitative trajectory inference
Home-page: https://hayamizu-lab.github.io/treefit-python/
Author: Momoko Hayamizu
Author-email: hayamizu@ism.ac.jp
License: LGPLv3+
Project-URL: Documentation, https://hayamizu-lab.github.io/treefit-python/
Project-URL: Source, https://github.com/hayamizu-lab/treefit-python/
Project-URL: Tracker, https://github.com/hayamizu-lab/treefit-python/issues/
Description: # Treefit for Python - The first software for quantitative trajectory inference
        
        This is an implementation of
        [**Treefit**](https://hayamizu-lab.github.io/treefit/) in Python.
        
        **Treefit** is a novel data analysis toolkit that helps you perform
        two types of analysis: 1) checking the goodness-of-fit of tree models
        to your single-cell gene expression data; and 2) deciding which tree
        best fits your data.
        
        ## Install
        
        ```bash
        pip install treefit
        ```
        
        ## Usage
        
        The main functions are `treefit.treefit()` and `treefit.plot()`:
        
        ```python
        fit = treefit.treefit(YOUR_SINGLE_CELL_GENE_EXPRESSION_DATA)
        treefit.plot(fit)
        ```
        
        See https://hayamizu-lab.github.io/treefit-python/ for details.
        
Platform: UNKNOWN
Classifier: Development Status :: 5 - Production/Stable
Classifier: License :: OSI Approved :: GNU Lesser General Public License v3 or later (LGPLv3+)
Classifier: Intended Audience :: Science/Research
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.5
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Classifier: Operating System :: MacOS :: MacOS X
Classifier: Operating System :: Microsoft :: Windows
Classifier: Operating System :: POSIX :: Linux
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Topic :: Scientific/Engineering :: Visualization
Requires-Python: >=3
Description-Content-Type: text/markdown
