.flake8
.gitignore
.pre-commit-config.yaml
.readthedocs.yaml
.zenodo.json
CHANGELOG.md
CITATION.cff
CODE_OF_CONDUCT.md
CONTRIBUTING.md
LICENSE
MANIFEST.in
Makefile
README.md
RELEASE.md
SECURITY.md
TROUBLESHOOTING.md
mypy.ini
pyproject.toml
paper/ieee.csl
paper/paper.bib
paper/paper.md
paper/figures/3_dcs_example.pdf
paper/figures/4_ca3_ca1_analysis.pdf
trancit/__init__.py
trancit/_version.py
trancit/config.py
trancit/logger_config.py
trancit/py.typed
trancit/causality/__init__.py
trancit/causality/base.py
trancit/causality/dcs.py
trancit/causality/granger.py
trancit/causality/rdcs.py
trancit/causality/transfer_entropy.py
trancit/core/__init__.py
trancit/core/base.py
trancit/core/exceptions.py
trancit/models/__init__.py
trancit/models/bic_selection.py
trancit/models/model_selection.py
trancit/models/model_validation.py
trancit/models/var_estimation.py
trancit/pipeline/__init__.py
trancit/pipeline/orchestrator.py
trancit/pipeline/stages.py
trancit/simulation/__init__.py
trancit/simulation/ar_simulation.py
trancit/simulation/oscillator_simulation.py
trancit/simulation/utils.py
trancit/simulation/var_simulation.py
trancit/utils/__init__.py
trancit/utils/core.py
trancit/utils/helpers.py
trancit/utils/plotting.py
trancit/utils/preprocess.py
trancit/utils/residuals.py
trancit/utils/signal.py