LICENSE
MANIFEST.in
README.md
requirements-dev.txt
requirements.txt
setup.cfg
setup.py
tests/conftest.py
tests/analyze/test_restart.py
tests/analyze/test_start.py
tests/fixtures/analysis-config/family_config.yaml
tests/fixtures/mip-shell/cust002/famMulti/analysis/genomes/famMulti/bwa/info/Sacct_famMulti.0.stderr.txt
tests/fixtures/mip-shell/cust002/famMulti/analysis/genomes/famMulti/bwa/info/Sacct_famMulti.0.stdout.txt
tests/fixtures/mip-shell/cust002/famMulti/analysis/genomes/famMulti/bwa/info/Sacct_famMulti.1.stderr.txt
tests/fixtures/mip-shell/cust002/famMulti/analysis/genomes/famMulti/bwa/info/Sacct_famMulti.1.stdout.txt
tests/fixtures/mip/cust001/famCompleted/exomes/famCompleted/famCompleted_qc_sampleInfo.yaml
tests/fixtures/mip/cust001/famStarted/genomes/famStarted/famStarted_qc_sampleInfo.yaml
tests/fixtures/mip/cust003/famErrored/analysis/exomes/famErrored/bwa/info/Sacct_famErrored.0.stdout.txt
tests/fixtures/mip/cust003/famErrored/analysis/exomes/famErrored/mip_log/2016-08-01/mip.pl_2016-08-01T13:29:13.log.status
tests/fixtures/mip/cust003/famErrored/exomes/famErrored/famErrored_qc_sampleInfo.yaml
tests/fixtures/sacct_output/failed.log
tests/fixtures/sacct_output/finished.log
tests/fixtures/sacct_output/running.log
trailblazer/__init__.py
trailblazer/exc.py
trailblazer/init.py
trailblazer/scan.py
trailblazer.egg-info/PKG-INFO
trailblazer.egg-info/SOURCES.txt
trailblazer.egg-info/dependency_links.txt
trailblazer.egg-info/entry_points.txt
trailblazer.egg-info/not-zip-safe
trailblazer.egg-info/requires.txt
trailblazer.egg-info/top_level.txt
trailblazer/add/__init__.py
trailblazer/add/cli.py
trailblazer/add/commit.py
trailblazer/add/core.py
trailblazer/add/sacct.py
trailblazer/add/utils.py
trailblazer/analyze/__init__.py
trailblazer/analyze/cli.py
trailblazer/analyze/restart.py
trailblazer/analyze/start.py
trailblazer/cli/__init__.py
trailblazer/cli/base.py
trailblazer/cli/core.py
trailblazer/cli/log.py
trailblazer/server/__init__.py
trailblazer/server/app.py
trailblazer/store/__init__.py
trailblazer/store/api.py
trailblazer/store/cli.py
trailblazer/store/models.py