LICENSE.md
pyproject.toml
setup.py
TrackRefiner.egg-info/PKG-INFO
TrackRefiner.egg-info/SOURCES.txt
TrackRefiner.egg-info/dependency_links.txt
TrackRefiner.egg-info/entry_points.txt
TrackRefiner.egg-info/requires.txt
TrackRefiner.egg-info/top_level.txt
Trackrefiner/__init__.py
Trackrefiner/cli.py
Trackrefiner/gui.py
Trackrefiner/core/__init__.py
Trackrefiner/core/correction/__init__.py
Trackrefiner/core/correction/findFixTrackingErrors.py
Trackrefiner/core/correction/action/__init__.py
Trackrefiner/core/correction/action/bacteriaTrackingUpdate.py
Trackrefiner/core/correction/action/candidateBacteriaFeatureSpace.py
Trackrefiner/core/correction/action/checkValidity.py
Trackrefiner/core/correction/action/drawDistributionPlot.py
Trackrefiner/core/correction/action/findOutlier.py
Trackrefiner/core/correction/action/generateLogFile.py
Trackrefiner/core/correction/action/helper.py
Trackrefiner/core/correction/action/neighborAnalysis.py
Trackrefiner/core/correction/action/propagateBacteriaLabels.py
Trackrefiner/core/correction/action/regionOfInterestFilter.py
Trackrefiner/core/correction/action/featuresCalculation/__init__.py
Trackrefiner/core/correction/action/featuresCalculation/calcElongationRate.py
Trackrefiner/core/correction/action/featuresCalculation/calcVelocity.py
Trackrefiner/core/correction/action/featuresCalculation/calculateOverlap.py
Trackrefiner/core/correction/action/featuresCalculation/fluorescenceIntensity.py
Trackrefiner/core/correction/action/trackingCost/__init__.py
Trackrefiner/core/correction/action/trackingCost/calculateCreateLinkCost.py
Trackrefiner/core/correction/action/trackingCost/calculateCreateLinkCostMCC.py
Trackrefiner/core/correction/action/trackingCost/calculateCreateLinkCostUB.py
Trackrefiner/core/correction/action/trackingCost/calculateCreateLinkCostUE.py
Trackrefiner/core/correction/action/trackingCost/calculateInitialCostTerms.py
Trackrefiner/core/correction/action/trackingCost/calculateMaintainingLinkCost.py
Trackrefiner/core/correction/action/trackingCost/evaluateDivisionLinkForUB.py
Trackrefiner/core/correction/modelTraning/__init__.py
Trackrefiner/core/correction/modelTraning/bacterialBehaviorModelTraining.py
Trackrefiner/core/correction/modelTraning/machineLearningPipeline.py
Trackrefiner/core/correction/modelTraning/mlModelContinuity.py
Trackrefiner/core/correction/modelTraning/mlModelDivision.py
Trackrefiner/core/correction/modelTraning/mlModelDivisionVsContinuity.py
Trackrefiner/core/correction/modelTraning/calculation/__init__.py
Trackrefiner/core/correction/modelTraning/calculation/calMotionAlignmentAngle.py
Trackrefiner/core/correction/modelTraning/calculation/calcDistanceForML.py
Trackrefiner/core/correction/modelTraning/calculation/iouCalForML.py
Trackrefiner/core/correction/modelTraning/calculation/lengthRatio.py
Trackrefiner/core/correction/segmentationErrors/__init__.py
Trackrefiner/core/correction/segmentationErrors/multiRegionsCorrection.py
Trackrefiner/core/correction/segmentationErrors/multiRegionsDetection.py
Trackrefiner/core/correction/segmentationErrors/noiseObjects.py
Trackrefiner/core/correction/trackingErrors/__init__.py
Trackrefiner/core/correction/trackingErrors/missingConnectivityLink.py
Trackrefiner/core/correction/trackingErrors/overAssignedDaughters.py
Trackrefiner/core/correction/trackingErrors/redundantParentLink.py
Trackrefiner/core/correction/trackingErrors/restoringTrackingLinks.py
Trackrefiner/core/correction/trackingErrors/unExpectedEnd.py
Trackrefiner/core/correction/trackingErrors/unexpectedBeginning.py
Trackrefiner/core/processing/__init__.py
Trackrefiner/core/processing/bacterialLifeHistoryAnalysis.py
Trackrefiner/core/processing/processCellProfilerData.py
Trackrefiner/utils/__init__.py
Trackrefiner/utils/jitterRemover.py
tests/test_cli.py