# Guides and References Index

This directory contains all organizational guides, implementation guides, quick references, checklists, and indices for the TracerTM project.

## Quick Start Files

- [00_START_HERE_UNIFIED_PLAN.md](00_START_HERE_UNIFIED_PLAN.md) - Unified plan for getting started
- [README_START_HERE.md](README_START_HERE.md) - README-style start here guide
- [PHASE_1_START_HERE.md](PHASE_1_START_HERE.md) - Phase 1 specific start here
- [START_HERE_TRACERTM_2025.md](START_HERE_TRACERTM_2025.md) - 2025 TracerTM start guide

## Implementation Guides

- [ADAPTER_INTEGRATION_GUIDE.md](ADAPTER_INTEGRATION_GUIDE.md) - Adapter pattern integration
- [ATLAS_ALTERNATIVE_GUIDE.md](ATLAS_ALTERNATIVE_GUIDE.md) - Alternative Atlas approach
- [ATLAS_IMPLEMENTATION_GUIDE.md](ATLAS_IMPLEMENTATION_GUIDE.md) - Atlas implementation guide
- [ATLAS_MIGRATION_SYSTEM_GUIDE.md](ATLAS_MIGRATION_SYSTEM_GUIDE.md) - Atlas migration system
- [DEPLOYMENT_GUIDE.md](DEPLOYMENT_GUIDE.md) - Deployment procedures
- [FINAL_SETUP_GUIDE.md](FINAL_SETUP_GUIDE.md) - Final setup procedures
- [FUMADOCS_SETUP_GUIDE.md](FUMADOCS_SETUP_GUIDE.md) - Fumadocs setup
- [GO_MIGRATIONS_GUIDE.md](GO_MIGRATIONS_GUIDE.md) - Go migrations guide
- [GOOSE_IMPLEMENTATION_GUIDE.md](GOOSE_IMPLEMENTATION_GUIDE.md) - Goose implementation
- [INFRASTRUCTURE_DEPLOYMENT_GUIDE.md](INFRASTRUCTURE_DEPLOYMENT_GUIDE.md) - Infrastructure deployment
- [INFRASTRUCTURE_SETUP_GUIDE.md](INFRASTRUCTURE_SETUP_GUIDE.md) - Infrastructure setup
- [MANUAL_SETUP_GUIDE.md](MANUAL_SETUP_GUIDE.md) - Manual setup guide
- [NEO4J_IMPLEMENTATION_GUIDE.md](NEO4J_IMPLEMENTATION_GUIDE.md) - Neo4j implementation
- [OBSERVABILITY_INFRASTRUCTURE_GUIDE.md](OBSERVABILITY_INFRASTRUCTURE_GUIDE.md) - Observability infrastructure
- [OPENAPI_GENERATION_GUIDE.md](OPENAPI_GENERATION_GUIDE.md) - OpenAPI generation
- [PHASE_1_IMPLEMENTATION_GUIDE.md](PHASE_1_IMPLEMENTATION_GUIDE.md) - Phase 1 implementation
- [PRODUCTION_GRADE_ENV_UPGRADE_GUIDE.md](PRODUCTION_GRADE_ENV_UPGRADE_GUIDE.md) - Production grade environment upgrade
- [RTM_CLI_GUIDE.md](RTM_CLI_GUIDE.md) - RTM CLI guide
- [STORAGE_HELPER_GUIDE.md](STORAGE_HELPER_GUIDE.md) - Storage helper guide
- [SWAGGER_REDOC_INTEGRATION_GUIDE.md](SWAGGER_REDOC_INTEGRATION_GUIDE.md) - Swagger/Redoc integration
- [TRACERTM_AI_IMPLEMENTATION_GUIDE.md](TRACERTM_AI_IMPLEMENTATION_GUIDE.md) - TracerTM AI implementation
- [TRACERTM_DOCS_IMPLEMENTATION_GUIDE.md](TRACERTM_DOCS_IMPLEMENTATION_GUIDE.md) - TracerTM docs implementation
- [TYPESCRIPT_7_GUIDE.md](TYPESCRIPT_7_GUIDE.md) - TypeScript 7 guide

## Frameworks and Tools Guides

- [2025_TOOLS_FRAMEWORKS_GUIDE.md](2025_TOOLS_FRAMEWORKS_GUIDE.md) - 2025 tools and frameworks guide
- [ENV_MANAGER_GUIDE.md](ENV_MANAGER_GUIDE.md) - Environment manager guide

## Quick References

- [DESIGN_CLI_QUICK_REFERENCE.md](DESIGN_CLI_QUICK_REFERENCE.md) - Design CLI quick reference
- [DOCUMENTATION_MIGRATION_QUICK_REFERENCE.md](DOCUMENTATION_MIGRATION_QUICK_REFERENCE.md) - Documentation migration quick reference
- [ENV_MANAGER_QUICK_REFERENCE.md](ENV_MANAGER_QUICK_REFERENCE.md) - Environment manager quick reference
- [INFRASTRUCTURE_QUICK_REFERENCE.md](INFRASTRUCTURE_QUICK_REFERENCE.md) - Infrastructure quick reference
- [MIGRATIONS_QUICK_REFERENCE.md](MIGRATIONS_QUICK_REFERENCE.md) - Migrations quick reference
- [NEO4J_QUICK_REFERENCE.md](NEO4J_QUICK_REFERENCE.md) - Neo4j quick reference
- [QUICK_DB_REFERENCE.md](QUICK_DB_REFERENCE.md) - Quick database reference
- [QUICK_FIX_REFERENCE.md](QUICK_FIX_REFERENCE.md) - Quick fixes reference
- [QUICK_FIXES.md](QUICK_FIXES.md) - Quick fixes
- [QUICK_REFERENCE_PROJECT_LOCAL.md](QUICK_REFERENCE_PROJECT_LOCAL.md) - Project local quick reference
- [QUICK_START.md](QUICK_START.md) - Quick start guide
- [QUICK_START_2025.md](QUICK_START_2025.md) - Quick start 2025
- [SEARCH_QUICK_REFERENCE.md](SEARCH_QUICK_REFERENCE.md) - Search quick reference
- [STORAGE_HELPER_QUICK_REF.md](STORAGE_HELPER_QUICK_REF.md) - Storage helper quick reference
- [SYNC_COMMANDS_REFERENCE.md](SYNC_COMMANDS_REFERENCE.md) - Sync commands reference
- [TUI_QUICK_REFERENCE.md](TUI_QUICK_REFERENCE.md) - TUI quick reference
- [TUI_TESTING_QUICK_REFERENCE.md](TUI_TESTING_QUICK_REFERENCE.md) - TUI testing quick reference

## Checklists

- [DEPLOYMENT_CHECKLIST.md](DEPLOYMENT_CHECKLIST.md) - Deployment checklist
- [EMBEDDINGS_CHECKLIST.md](EMBEDDINGS_CHECKLIST.md) - Embeddings checklist
- [ENV_MANAGER_CHECKLIST.md](ENV_MANAGER_CHECKLIST.md) - Environment manager checklist
- [FINAL_CHECKLIST.md](FINAL_CHECKLIST.md) - Final checklist
- [IMPLEMENTATION_CHECKLIST.md](IMPLEMENTATION_CHECKLIST.md) - Implementation checklist
- [MASTER_IMPLEMENTATION_CHECKLIST.md](MASTER_IMPLEMENTATION_CHECKLIST.md) - Master implementation checklist
- [MASTER_TEST_EXECUTION_CHECKLIST.md](MASTER_TEST_EXECUTION_CHECKLIST.md) - Master test execution checklist
- [NEO4J_CHECKLIST.md](NEO4J_CHECKLIST.md) - Neo4j checklist
- [PHASE_1_EXECUTION_CHECKLIST.md](PHASE_1_EXECUTION_CHECKLIST.md) - Phase 1 execution checklist
- [PRODUCTION_READINESS_CHECKLIST.md](PRODUCTION_READINESS_CHECKLIST.md) - Production readiness checklist
- [TRACERTM_WEEK1_CHECKLIST.md](TRACERTM_WEEK1_CHECKLIST.md) - TracerTM week 1 checklist
- [VERIFICATION_CHECKLIST.md](VERIFICATION_CHECKLIST.md) - Verification checklist
- [WIREFRAME_COMPLETION_CHECKLIST.md](WIREFRAME_COMPLETION_CHECKLIST.md) - Wireframe completion checklist

## Indices and References

- [DEEP_DIVE_COMPREHENSIVE_INDEX.md](DEEP_DIVE_COMPREHENSIVE_INDEX.md) - Comprehensive deep dive index
- [DOCUMENTATION_MIGRATION_INDEX.md](DOCUMENTATION_MIGRATION_INDEX.md) - Documentation migration index
- [ENV_MANAGER_INDEX.md](ENV_MANAGER_INDEX.md) - Environment manager index
- [INFRASTRUCTURE_DOCUMENTATION_INDEX.md](INFRASTRUCTURE_DOCUMENTATION_INDEX.md) - Infrastructure documentation index
- [MIGRATIONS_INDEX.md](MIGRATIONS_INDEX.md) - Migrations index
- [MODERN_TOOLING_PARADIGMS_INDEX.md](MODERN_TOOLING_PARADIGMS_INDEX.md) - Modern tooling paradigms index
- [PHASE_1_INDEX.md](PHASE_1_INDEX.md) - Phase 1 index
- [PHASE_3_TEST_FILES_INDEX.md](PHASE_3_TEST_FILES_INDEX.md) - Phase 3 test files index
- [PYTHON_COVERAGE_INDEX.md](PYTHON_COVERAGE_INDEX.md) - Python coverage index
- [RESEARCH_INDEX.md](RESEARCH_INDEX.md) - Research index
- [TOOLING_AUDIT_INDEX.md](TOOLING_AUDIT_INDEX.md) - Tooling audit index
- [TUI_INDEX.md](TUI_INDEX.md) - TUI index
- [WIREFRAME_FILES_INDEX.md](WIREFRAME_FILES_INDEX.md) - Wireframe files index

## Quick Start Sections

- [FILE_WATCHER_QUICK_START.md](FILE_WATCHER_QUICK_START.md) - File watcher quick start
- [DOCUMENTATION_CONSOLIDATION_QUICK_START.md](DOCUMENTATION_CONSOLIDATION_QUICK_START.md) - Documentation consolidation quick start
- [PHASE_1_QUICK_SUMMARY.md](PHASE_1_QUICK_SUMMARY.md) - Phase 1 quick summary

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**Total Files:** 75 guides and references

For the main documentation index, see [DOCUMENTATION_INDEX.md](../DOCUMENTATION_INDEX.md) in the root directory.
