Metadata-Version: 2.1
Name: torchtree
Version: 1.0.0
Summary: Phylogenetic inference with pytorch
Home-page: https://github.com/4ment/torchtree
Author: Mathieu Fourment
Author-email: mathieu.fourment@uts.edu.au
License: GPL3
Keywords: phylogenetics,variational,Bayes,pytorch
Platform: UNKNOWN
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: GNU General Public License v3 (GPLv3)
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Requires-Python: >=3.6
Requires-Dist: dendropy
Requires-Dist: numpy (>=1.7)
Requires-Dist: torch (>=1.9)
Provides-Extra: dev
Requires-Dist: black ; extra == 'dev'
Requires-Dist: flake8 ; extra == 'dev'
Requires-Dist: isort ; extra == 'dev'
Requires-Dist: pylint ; extra == 'dev'
Provides-Extra: test
Requires-Dist: pytest ; extra == 'test'

# torchtree

[![Python package](https://github.com/4ment/torchtree/actions/workflows/python-package.yml/badge.svg)](https://github.com/4ment/torchtree/actions/workflows/python-package.yml)

## Installation

### Get the torchtree source
```bash
git clone https://github.com/4ment/torchtree
cd torchtree
```

### Install dependencies

Installing dependencies using Anaconda
```bash
conda env create -f environment.yml
conda activate torchtree
```

or using pip
```bash
pip install -r requirements.txt
```

### Install torchtree
```bash
python setup.py install
```

### Check install
```bash
torchtree --help
```

### Quick start
```bash
torchtree examples/advi/fluA.json
```

