CONTRIBUTING.rst
HISTORY.rst
LICENSE
MANIFEST.in
README.md
setup.cfg
setup.py
docs/Makefile
docs/make.bat
docs/images/composed.png
docs/images/data_structures.png
docs/images/histogram_standardization.png
docs/images/queue.gif
docs/images/random_bias_field.gif
docs/images/random_elastic_deformation.gif
docs/images/random_ghosting.gif
docs/images/random_motion.gif
docs/images/random_noise.gif
docs/images/random_spike.gif
docs/images/random_swap.jpg
docs/images/z_normalization.png
docs/images/gifs_readme/10_RandomGhosting_mri.gif
docs/images/gifs_readme/1_Lambda_mri.png
docs/images/gifs_readme/2_RandomBlur_mri.gif
docs/images/gifs_readme/3_RandomFlip_mri.gif
docs/images/gifs_readme/4_Compose_mri.gif
docs/images/gifs_readme/5_RandomAffine_mri.gif
docs/images/gifs_readme/6_RandomElasticDeformation_mri.gif
docs/images/gifs_readme/7_RandomBiasField_mri.gif
docs/images/gifs_readme/8_RandomMotion_mri.gif
docs/images/gifs_readme/9_RandomSpike_mri.gif
docs/source/README.rst
docs/source/conf.py
docs/source/datasets.rst
docs/source/index.rst
docs/source/quickstart.rst
docs/source/data/dataset.rst
docs/source/data/image.rst
docs/source/data/patch_based.rst
docs/source/data/patch_inference.rst
docs/source/data/patch_training.rst
docs/source/data/subject.rst
docs/source/interfaces/cli.rst
docs/source/interfaces/index.rst
docs/source/interfaces/slicer.rst
docs/source/transforms/augmentation.rst
docs/source/transforms/others.rst
docs/source/transforms/preprocessing.rst
docs/source/transforms/transforms.rst
tests/__init__.py
tests/test_cli.py
tests/test_utils.py
tests/utils.py
tests/data/__init__.py
tests/data/test_image.py
tests/data/test_io.py
tests/data/test_queue.py
tests/data/test_subject.py
tests/data/test_subjects_dataset.py
tests/data/inference/__init__.py
tests/data/inference/test_aggregator.py
tests/data/inference/test_grid_sampler.py
tests/data/inference/test_inference.py
tests/data/sampler/__init__.py
tests/data/sampler/test_label_sampler.py
tests/data/sampler/test_patch_sampler.py
tests/data/sampler/test_random_sampler.py
tests/data/sampler/test_uniform_sampler.py
tests/data/sampler/test_weighted_sampler.py
tests/datasets/__init__.py
tests/datasets/test_ixi.py
tests/image_data/dicom/IMG0001.dcm
tests/image_data/dicom/IMG0002.dcm
tests/image_data/dicom/IMG0003.dcm
tests/image_data/dicom/IMG0004.dcm
tests/image_data/dicom/IMG0005.dcm
tests/image_data/dicom/IMG0006.dcm
tests/image_data/dicom/IMG0007.dcm
tests/image_data/dicom/IMG0008.dcm
tests/image_data/dicom/IMG0009.dcm
tests/image_data/dicom/IMG0010.dcm
tests/image_data/dicom/IMG0011.dcm
tests/image_data/dicom/IMG0012.dcm
tests/image_data/dicom/IMG0013.dcm
tests/image_data/dicom/IMG0014.dcm
tests/image_data/dicom/IMG0015.dcm
tests/image_data/dicom/IMG0016.dcm
tests/image_data/dicom/IMG0017.dcm
tests/transforms/__init__.py
tests/transforms/test_collate.py
tests/transforms/test_invertibility.py
tests/transforms/test_lambda_transform.py
tests/transforms/test_reproducibility.py
tests/transforms/test_transforms.py
tests/transforms/augmentation/__init__.py
tests/transforms/augmentation/test_oneof.py
tests/transforms/augmentation/test_random_affine.py
tests/transforms/augmentation/test_random_anisotropy.py
tests/transforms/augmentation/test_random_bias_field.py
tests/transforms/augmentation/test_random_blur.py
tests/transforms/augmentation/test_random_elastic_deformation.py
tests/transforms/augmentation/test_random_flip.py
tests/transforms/augmentation/test_random_gamma.py
tests/transforms/augmentation/test_random_ghosting.py
tests/transforms/augmentation/test_random_labels_to_image.py
tests/transforms/augmentation/test_random_motion.py
tests/transforms/augmentation/test_random_noise.py
tests/transforms/augmentation/test_random_spike.py
tests/transforms/augmentation/test_random_swap.py
tests/transforms/preprocessing/__init__.py
tests/transforms/preprocessing/test_crop.py
tests/transforms/preprocessing/test_crop_pad.py
tests/transforms/preprocessing/test_histogram_standardization.py
tests/transforms/preprocessing/test_pad.py
tests/transforms/preprocessing/test_resample.py
tests/transforms/preprocessing/test_rescale.py
tests/transforms/preprocessing/test_to_canonical.py
tests/transforms/preprocessing/test_z_normalization.py
torchio/__init__.py
torchio/cli.py
torchio/reference.py
torchio/torchio.py
torchio/utils.py
torchio/visualization.py
torchio.egg-info/PKG-INFO
torchio.egg-info/SOURCES.txt
torchio.egg-info/dependency_links.txt
torchio.egg-info/entry_points.txt
torchio.egg-info/not-zip-safe
torchio.egg-info/requires.txt
torchio.egg-info/top_level.txt
torchio/data/__init__.py
torchio/data/dataset.py
torchio/data/image.py
torchio/data/io.py
torchio/data/queue.py
torchio/data/subject.py
torchio/data/inference/__init__.py
torchio/data/inference/aggregator.py
torchio/data/inference/grid_sampler.py
torchio/data/sampler/__init__.py
torchio/data/sampler/label.py
torchio/data/sampler/sampler.py
torchio/data/sampler/uniform.py
torchio/data/sampler/weighted.py
torchio/datasets/__init__.py
torchio/datasets/fpg.py
torchio/datasets/ixi.py
torchio/datasets/slicer.py
torchio/datasets/itk_snap/__init__.py
torchio/datasets/itk_snap/itk_snap.py
torchio/datasets/mni/__init__.py
torchio/datasets/mni/colin.py
torchio/datasets/mni/icbm.py
torchio/datasets/mni/mni.py
torchio/datasets/mni/pediatric.py
torchio/datasets/mni/sheep.py
torchio/external/__init__.py
torchio/external/due.py
torchio/transforms/__init__.py
torchio/transforms/data_parser.py
torchio/transforms/fourier.py
torchio/transforms/intensity_transform.py
torchio/transforms/interpolation.py
torchio/transforms/lambda_transform.py
torchio/transforms/spatial_transform.py
torchio/transforms/transform.py
torchio/transforms/augmentation/__init__.py
torchio/transforms/augmentation/composition.py
torchio/transforms/augmentation/random_transform.py
torchio/transforms/augmentation/intensity/__init__.py
torchio/transforms/augmentation/intensity/random_bias_field.py
torchio/transforms/augmentation/intensity/random_blur.py
torchio/transforms/augmentation/intensity/random_gamma.py
torchio/transforms/augmentation/intensity/random_ghosting.py
torchio/transforms/augmentation/intensity/random_labels_to_image.py
torchio/transforms/augmentation/intensity/random_motion.py
torchio/transforms/augmentation/intensity/random_noise.py
torchio/transforms/augmentation/intensity/random_spike.py
torchio/transforms/augmentation/intensity/random_swap.py
torchio/transforms/augmentation/spatial/__init__.py
torchio/transforms/augmentation/spatial/random_affine.py
torchio/transforms/augmentation/spatial/random_anisotropy.py
torchio/transforms/augmentation/spatial/random_elastic_deformation.py
torchio/transforms/augmentation/spatial/random_flip.py
torchio/transforms/preprocessing/__init__.py
torchio/transforms/preprocessing/intensity/__init__.py
torchio/transforms/preprocessing/intensity/histogram_standardization.py
torchio/transforms/preprocessing/intensity/normalization_transform.py
torchio/transforms/preprocessing/intensity/rescale.py
torchio/transforms/preprocessing/intensity/z_normalization.py
torchio/transforms/preprocessing/spatial/__init__.py
torchio/transforms/preprocessing/spatial/bounds_transform.py
torchio/transforms/preprocessing/spatial/crop.py
torchio/transforms/preprocessing/spatial/crop_or_pad.py
torchio/transforms/preprocessing/spatial/pad.py
torchio/transforms/preprocessing/spatial/resample.py
torchio/transforms/preprocessing/spatial/to_canonical.py