
from .lazy_ligandome_dict import LazyLigandomeDict, AlleleNotFound
from .converters import (
    epitopes_to_dataframe,
    epitopes_to_csv
)
from .predict_epitopes import (
    predict_epitopes_from_args,
    predict_epitopes_from_variants,
    predict_epitopes_from_mutation_effects,
)
from .epitope_prediction import (
    build_epitope_collection_from_binding_predictions,
    MutantEpitopePrediction,
)
from .sequence_helpers import (
    check_padding_around_mutation,
    peptide_mutation_interval,
    contains_mutant_residues,
    protein_subsequences_around_mutations,
)
from . import commandline_args

__all__ = [
    "LazyLigandomeDict",
    "AlleleNotFound",
    "commandline_args",
    "epitopes_to_dataframe",
    "epitopes_to_csv",
    "predict_epitopes_from_variants",
    "predict_epitopes_from_mutation_effects",
    "predict_epitopes_from_args",
    "build_epitope_collection_from_binding_predictions",
    "contains_mutant_residues",
    "check_padding_around_mutation",
    "peptide_mutation_interval",
    "protein_subsequences_around_mutations",
    "MutantEpitopePrediction",
]
