setup.py
scripts/topiary
test/__init__.py
test/data.py
test/test_contains_mutant_residues.py
test/test_dataframe.py
test/test_effect_expression_filters.py
test/test_epitope_filters.py
test/test_epitopes_from_commandline_args.py
test/test_lazy_ligandome_dict.py
test/test_load_cufflinks_fpkm.py
test/test_load_stringtie_gtf_fpkm.py
test/test_mutant_epitope_predictions_class1.py
test/test_mutant_epitope_predictions_class2.py
test/test_padding.py
test/test_parsing_helpers.py
test/test_peptide_mutation_interval.py
test/test_rna_helpers.py
test/test_variant_expression_filters.py
topiary/__init__.py
topiary/commandline_args.py
topiary/converters.py
topiary/epitope_prediction.py
topiary/filters.py
topiary/lazy_ligandome_dict.py
topiary/parsing_helpers.py
topiary/predict_epitopes.py
topiary/sequence_helpers.py
topiary.egg-info/PKG-INFO
topiary.egg-info/SOURCES.txt
topiary.egg-info/dependency_links.txt
topiary.egg-info/requires.txt
topiary.egg-info/top_level.txt
topiary/rna/__init__.py
topiary/rna/common.py
topiary/rna/cufflinks.py
topiary/rna/gtf.py