Metadata-Version: 2.1
Name: topacedo
Version: 0.2.7
Summary: topacedo
Home-page: https://github.com/parashardhapola/topacedo
Author: Parashar Dhapola
Author-email: parashar.dhapola@gmail.com
License: UNKNOWN
Keywords: store
Platform: UNKNOWN
Classifier: Development Status :: 4 - Beta
Classifier: Natural Language :: English
Classifier: Operating System :: POSIX :: Linux
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
License-File: LICENSE.md

# TopACeDo
#### Topology Assisted Cell Downsampling

Topacedo works with Scarf to perform memory efficient downsampling of single-cell genomics data.
Using a pre-built neighbourhood graph of cells, Topacedo aims to sample cells from the graph such 
that the manifold is preserved. Topecedo's algorithm can be diveded into two phases:

- assigning prizes to cells and penalties to edges
- running a fast approximate prize-collecting steiner tree  


